Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1197 190 5e-43 seq1737 167 5e-36 >seq1197 Length=26491 Score = 190 bits (210), Expect = 5e-43 Identities = 170/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| |||||||| ||||||||||| || || | ||||| | |||||| Sbjct 22152 AGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCC 22211 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | || || || || |||| |||||||||||| Sbjct 22212 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 22271 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||||||| ||||||||| |||||||| ||| Sbjct 22272 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTC 22331 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| ||||| || || | ||||||| Sbjct 22332 TTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 178 bits (196), Expect = 3e-39 Identities = 175/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||| |||||||| || || ||||| || || || | || Sbjct 22655 TCCACGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAG 22714 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || |||||||| || |||||||| || |||||||| || | ||||||||| || |||| Sbjct 22715 AGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAAT 22774 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||| ||||| || || ||||||||||||||||| || || || Sbjct 22775 TCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTC 22834 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | |||||| |||||||| |||||||| || || || | ||||||| Sbjct 22835 CAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCATT 22880 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || || ||||| || ||||| ||||||||||| || || | | Sbjct 21630 TCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAA 21689 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| || || |||||||| || |||||||| | || || || || || || | Sbjct 21690 GGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGAT 21749 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| ||||| || || ||||| |||||||| |||||| ||||||||| Sbjct 21750 TCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTC 21809 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| |||||||| ||||||||||| || || | |||||| Sbjct 21810 GAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||||||||| || || ||||| || || || | || Sbjct 23158 TCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAG 23217 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || |||||||| || || || || || ||||||||||| | ||||| || || || | Sbjct 23218 AGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGAT 23277 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| || |||||||| ||||| || ||| ||| || || Sbjct 23278 TCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTC 23337 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| |||||||| || | |||||| ||||| | |||||| Sbjct 23338 GAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| || |||||||| ||||| | | ||| | |||||| Sbjct 23399 AGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCC 23458 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | ||| || || || || | |||||||||||| Sbjct 23459 TCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 23518 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || ||| || ||||| ||||| ||| Sbjct 23519 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTC 23578 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| ||||| || || | ||||||| Sbjct 23579 TTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| || |||||||| || |||| ||| || |||||||| Sbjct 24132 AGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 24191 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | ||| ||||| || || | ||| |||||||| Sbjct 24192 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 24251 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| |||||||||||||| || ||||| || |||||||| Sbjct 24252 TGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTT 24311 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || || || | ||||| Sbjct 24312 TTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Score = 136 bits (150), Expect = 9e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || |||||||| | ||| || || || || |||| |||||||||||| ||||||| Sbjct 23010 GCTTACCGGCGAAGATCAAGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCT 23069 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | |||||||| ||||||||||||||| ||| |||||||| ||||| |||||||| | Sbjct 23070 TGGCCTTCACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCAG 23129 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | | |||||| || || | |||||| Sbjct 23130 TCAAAGTCTTGACGAAGATCTGCAT 23154 Score = 114 bits (126), Expect = 3e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| || ||||| || |||||||||||| ||||||||| Sbjct 24011 TCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTC 24070 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| |||||||| ||||||||||| || || | ||||||| Sbjct 24071 AAGAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATT 24116 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || |||||||| || | || || || || |||| ||||||||| |||||||||| Sbjct 23741 GCTTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCT 23800 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | |||||||| || || || || || ||| || ||||| ||||| |||||||| | Sbjct 23801 TGGCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAG 23860 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 |||| || || || || | ||||||| Sbjct 23861 TGAGGGTTTTCACGAAGATCTGCATT 23886 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 ||||| || || || | ||||||||| ||||| ||||| || ||||| ||||||||| Sbjct 22530 TGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCGATGGTG 22589 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || || ||| |||||||| ||||| |||||||| ||||| ||||| || || | |||| Sbjct 22590 TCGGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGC 22649 Query 211113 AT 211114 || Sbjct 22650 AT 22651 Score = 100 bits (110), Expect = 7e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | || || || || || || | |||||||||||| |||||||| Sbjct 21992 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 22051 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| |||||||| || ||| ||| || ||||| ||||| |||||||| || Sbjct 22052 GGCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGT 22111 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | |||||| || || | |||||| Sbjct 22112 CAAAGTCTTGACGAAGATTTGCATT 22136 >seq1737 Length=20200 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||| |||||||| || |||||||| || || | || Sbjct 9784 TCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 9843 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || ||||| || |||||||| | |||||| || || || |||| Sbjct 9844 AGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAAT 9903 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||||||| || || || |||||||| || || || ||||| Sbjct 9904 TCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTC 9963 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| ||||| |||||||| || || | ||||| Sbjct 9964 GAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158925349198265