Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1197 84.2 2e-11 >seq1197 Length=26491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || || ||| || || || || || || | | Sbjct 24117 CCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24176 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || |||| | | || || ||||| || || || || || || | |||||||| |||||| Sbjct 24177 AGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 24236 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| ||||| |||||| |||| || | | || || | |||||| Sbjct 24237 -ATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCAC 24295 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| ||||||| |||| |||||| || ||||||||||| Sbjct 24296 CTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429465707337293