Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1197 87.8 1e-12 >seq1197 Length=26491 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| ||||| ||||| || |||||| | ||||| || | | Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || ||| ||||| ||||| | || ||||| || Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || || || | | | ||| | ||| ||||| Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 22700 TATCCAGAAGGAATCCAC 22683 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || ||||| || ||||| |||||||| || || | Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || || ||||| ||||| | || ||||||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| |||||||| || || | | | ||| | ||| ||||| Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || ||||| | || || ||| Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGTT 23173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337946732432588