Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq126 178 2e-39 >seq126 Length=90294 Score = 178 bits (196), Expect = 2e-39 Identities = 453/687 (66%), Gaps = 2/687 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || || || |||||||| ||||| | ||| ||||| || |||||||||||| ||| Sbjct 11082 TCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 11141 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || || | || || || ||||| || ||||| || ||||| ||||| | || Sbjct 11142 CAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAAC 11201 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| || | | | ||||| ||| || ||||| ||| | ||||| | | Sbjct 11202 AGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAA 11261 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||| | |||||||| || || || || || | |||| || || || || ||||| Sbjct 11262 ACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCT 11321 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | ||| | ||||||||| || ||||| | | ||| || || | || || ||| Sbjct 11322 TGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGAT 11381 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 ||||| || ||||||| || |||| | || || || ||| | | | || Sbjct 11382 GTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTGAGTCCG 11441 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 ||||| || || ||||||| || || ||||| | |||| || |||||||| || Sbjct 11442 ATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGAGA 11501 Query 78345 ATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || || || ||| ||| || ||| || ||| |||||| || || | ||||| Sbjct 11502 ATCGAATCCTCGCTCATTGTCAACAAG-AAGCAGGAAGACATCTGTGGACGGCAGGTTCC 11560 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 | || || | || || || ||||| || | | ||||| | |||||||| || Sbjct 11561 AGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTACGT 11620 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || || || | | ||||| | || ||||| | || || ||||||| ||| || Sbjct 11621 CTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATCTG 11680 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 || || | |||||| | | || || || || | | ||| || ||||| || || Sbjct 11681 TTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTCTT 11740 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTC 78610 || ||||| ||| |||| ||| |||| Sbjct 11741 GAATCCAAAGTAGCTGTAGGAATAGTC 11767 Score = 158 bits (174), Expect = 2e-33 Identities = 300/441 (68%), Gaps = 7/441 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || ||||| | ||||||||| ||||| || || ||| ||||||||||||| Sbjct 9691 GCTGGCTTGGTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 9750 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||| | | || || || | || || ||||| || | ||| ||| | Sbjct 9751 TGCATCGATGTGATGGCTGCGTAGCTTGGCTTAGCCATGTGAATGTTGAGCGATTGAGAT 9810 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||| | ||||| | ||| || ||||| | || || ||| |||| |||||| Sbjct 9811 TGATCAATGTATGCTCCACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCC 9870 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA-----GGTTTGTATTTTGAATGG 77037 || | || | | | ||||| |||||||| | || ||| ||||||||| Sbjct 9871 CACACGGTGAGATAGAGTGCCTTGATGTCATCTGGGATTCCGGGAATGT--TTTGAATGG 9928 Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 | || | | || | | |||||| || |||||| |||||||| ||||| | Sbjct 9929 ATCCGTTGTTGGCGATGAGTCGATTCTTCATCTCATCAGTCCACAATCCTCTCTCAACCA 9988 Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 || | | || | || |||||||| || || || ||||| || | || | ||| | || Sbjct 9989 AATCCTTGAGCATGTGTGGATTAACAATCTGGAAGTCTCCGGAAAGCACACGACGTGAGT 10048 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 |||| || ||| ||||| || | ||||| |||||||| | ||||| || || |||| Sbjct 10049 AAATGTTTGAGGTGTATGGCTCAATCGATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAG 10108 Query 77218 CAGTTGGCATAGGTGCCACCA 77238 |||||||||| || |||| || Sbjct 10109 CAGTTGGCATTGGAGCCATCA 10129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694536283243040