Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq126 178 2e-39 >seq126 Length=90294 Score = 178 bits (196), Expect = 2e-39 Identities = 317/462 (69%), Gaps = 7/462 (2%) Strand=Plus/Plus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| |||| || | | ||||| || ||||| | ||||||||| ||||| || || Sbjct 9670 GTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTCCAGTCTTGAGT 9729 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 ||| ||||||||||||| ||||| ||| | | || || || | || || Sbjct 9730 CCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTGGCTTAGCCATG 9789 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 ||||| || | ||| ||| |||||| ||| | ||||| | ||| || ||||| | || Sbjct 9790 TGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGGCCATCTCGATG 9849 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 || ||| |||| |||||||| | || | | | ||||| |||||||| || Sbjct 9850 ATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGTCATCTGG--GA 9907 Query 75617 TTTG-----TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCAT 75671 || | ||||||||||||||| | | || | | |||||| ||||||||| Sbjct 9908 TTCCGGGAATGTTTTGAATGGATCCGTTGTTGGCGATGAGTCGATTCTTCATCTCATCAG 9967 Query 75672 TCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTC 75731 |||||||| |||||| ||| | | || | || ||||||||||| || || |||| Sbjct 9968 TCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAATCTGGAAGTCTC 10027 Query 75732 CAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTC 75791 | || | || | || | |||||| || ||| ||||| || | ||||| ||||||| Sbjct 10028 CGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGATTCGTTGTTTC 10087 Query 75792 CCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | | ||||| || || |||||||| ||||| || |||| || Sbjct 10088 CGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCA 10129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712798398851520