Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq7075 342 3e-89 >seq7075 Length=3190 Score = 342 bits (378), Expect = 3e-89 Identities = 273/337 (81%), Gaps = 35/337 (10%) Strand=Plus/Plus Query 58479 AGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTCCGGGCATCCGTAAGG 58538 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 2779 AGGGGTGCCCGCAGAATTAGGAAAAAATCGTACGCTAAGGTTTTCCGGGCATCCGTAGGG 2838 Query 58539 GC-------------------------------CGAAACTTCCCGTCTTCCAGTCTGCGG 58567 || |||||||||||||||||||| |||||| Sbjct 2839 GCCGAAACNNNNNNNNNNNNNNTCCGTAGGGGCCGAAACTTCCCGTCTTCCAGCCTGCGG 2898 Query 58568 CTCTGCCGCCAGACGTAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGG 58627 ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 2899 CTCAGCCGCCAGACGTAATCGCCGGTCAGGTTGATGTGCTCCCAGCCCAACGGCGACAGG 2958 Query 58628 AATTGCAGCAGCTCGCCGTCCACCGGCTTGCCGGCCTCGACCAACCCCTGGGTGGCGCGT 58687 ||||||||||||| ||||||||||| |||||||| ||||||| | |||||| || Sbjct 2959 TATTGCAGCAGCTCACCGTCCACCGGTTTGCCGGCTTCGACCAGCNNNNNGGTGGCACGC 3018 Query 58688 TCCAGGTACACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCC 58747 ||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||| Sbjct 3019 TCCAGGTACACCGTGTTCCACAGCACGAT---GGCCGTCACCAAGTTTGGGCTTCTGGCT 3075 Query 58748 CGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTT 58784 | |||||||||| |||||||| |||||| |||||||| Sbjct 3076 CTGTAGCGCTGCGGCTCGAAGTTCCGAT-CCTGATTT 3111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330837654920326