Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_031261.1 Length=48670 Score E Sequences producing significant alignments: (Bits) Value seq6320 80.6 8e-11 >seq6320 Length=4127 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 2268 TCGGTGCTGCGCGCGATCGGGCTGCCGATCCGCCGCACCGACTGGCGGATCCGCCCGAAC 2327 |||||||| |||||| || || |||||| || ||||| ||| |||| | || | Sbjct 3968 TCGGTGCTCCGCGCGGTCCCCCTCCCGATCATGCGTACCGAGTGGGCGATCGACGGGACC 4027 Query 2328 GGCGCCCGCCCCGAGGTGGTCGAGCACGTCGCCGCCTGCCTCGGTCTGCCGGTCGAGGGC 2387 || |||||||||||| |||| ||| |||| ||| ||| || |||||| || |||| Sbjct 4028 GGATGCCGCCCCGAGGTAGTCGCACACATCGCGGCCGACCTGGGACTGCCGATCAAGGGT 4087 Query 2388 GATGAATCCGACAGGCCGACGCCGCGCACCCGGGGCCGGTTCT 2430 | | ||||| | || ||| |||||| ||||||||||| Sbjct 4088 CA-GCCGCCGAC--GGCGCCGCTGCGCACGAAGGGCCGGTTCT 4127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155594197427824