Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1197 141 2e-28 seq1737 122 2e-22 >seq1197 Length=26491 Score = 141 bits (156), Expect = 2e-28 Identities = 167/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||||| || ||||| |||||||||||||| |||| | || Sbjct 22143 CTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTA 22202 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| ||||||||||| || |||||||| || | | |||| Sbjct 22203 CGTCCATCCTCGAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTC 22260 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || ||||| |||| | | |||| || || || |||| Sbjct 22261 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAA 22320 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| || || || || ||||| ||||||||||||| ||||||| Sbjct 22321 GAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 140 bits (154), Expect = 7e-28 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || ||||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 24123 CTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTT 24182 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| ||||||||||| || || |||||||| | | ||||| Sbjct 24183 CTTCCATCCTCGAGCTGCTTT--CCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTC 24240 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| ||||| ||||| ||||| |||| | | |||| ||| ||| || || | Sbjct 24241 CCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCA 24300 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || || | || || ||||||| ||||| Sbjct 24301 GGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Score = 138 bits (152), Expect = 3e-27 Identities = 159/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || ||||| ||||| |||| | |||||| ||||| || | Sbjct 22673 CAAG-TGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGA 22731 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || || || ||||| | | ||||||||||| || || Sbjct 22732 GCTGCTTT--CCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTG 22789 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | | |||| ||| ||| ||||| | ||| ||||| || Sbjct 22790 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTT 22849 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| |||||||| | ||||||| Sbjct 22850 TCCAGTGAGAGTTTTCACGAAAATCTGCATT 22880 Score = 138 bits (152), Expect = 3e-27 Identities = 166/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || ||||| ||||| ||||| || |||||||||||||| | || || Sbjct 23390 CTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTG 23449 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| ||||||||||| || || ||||| || | | ||||| Sbjct 23450 CGTCCATCCTCAAGCTGCTTT--CCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTC 23507 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || ||||| |||| | | | || ||| || ||||| | Sbjct 23508 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGA 23567 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || ||||| ||||| ||||||| ||||||| Sbjct 23568 GGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 125 bits (138), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || ||||| |||||||||||||| |||| || || | || || Sbjct 21642 GAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTC 21701 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| | | |||||| || | | |||||||||||| Sbjct 21702 CTCGAGCTGCTTT--CCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTG 21759 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| ||||| ||||| |||| | | | || || || || || || || || Sbjct 21760 TCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATG 21819 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| ||||||| |||||| Sbjct 21820 GTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || || ||||| ||||| |||| | |||||| ||||| || | Sbjct 23176 CAAG-TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGA 23234 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||||||||| ||||| || || | | |||||||||||| ||||| | Sbjct 23235 GTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGA 23294 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | | || || || ||||| || || || || || | Sbjct 23295 TCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTC 23354 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || |||| |||||| Sbjct 23355 CAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || |||||||| || | | ||||||||||| || || || || Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | | |||||| || ||||| || || || || || || ||| Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||||| ||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCATT 23886 >seq1737 Length=20200 Score = 122 bits (134), Expect = 2e-22 Identities = 157/211 (74%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 9802 CAAG-TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCAA 9860 Query 151957 G--GCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| ||||||||||| |||| | ||||| || | | ||||||||||| || | Sbjct 9861 GTTGCTTT--CCGGCGAAGATCAAGCGT-TGCTGATCTGGTGGAATTCCTTCCTTGTCCT 9917 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | || || |||||| |||| | | | || ||| ||| || || || ||||| || | Sbjct 9918 GGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCT 9977 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| |||||||| ||||||| ||||| Sbjct 9978 TACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153595191616131