Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1737 178 3e-39 seq1197 165 2e-35 seq611 95.1 3e-14 >seq1737 Length=20200 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | ||| || || |||||||||||||| | Sbjct 9781 ACCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 9840 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| ||||| || ||||| |||||||| ||||| || || || Sbjct 9841 GAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGG 9900 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || || | ||||| || || ||||| ||||| Sbjct 9901 AATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGAC 9960 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct 9961 CTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 >seq1197 Length=26491 Score = 165 bits (182), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCG 282940 |||||||| || ||||| | || || || ||||||||||| |||| |||| ||||| Sbjct 23393 AGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAG-GTGCG 23451 Query 282941 GCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTC 283000 |||||||| || || || ||||| ||||| | | ||| || || || || || || Sbjct 23452 TCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTC 23511 Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 ||||||||||||||| || || ||| | ||||| || || ||||||||||||||||| || Sbjct 23512 CTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGAGGGT 23571 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| ||||| || || | ||||| ||||| ||||||||| Sbjct 23572 GATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | ||| ||| || ||||| |||||||| | Sbjct 23155 ACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 23214 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||| |||||||| ||||| ||||| | | ||||| || || Sbjct 23215 GAGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGG 23274 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||||||||| || || ||| | || || || || || |||||||| Sbjct 23275 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGAC 23334 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||| ||||| || ||||||||||| || || |||||||| Sbjct 23335 TTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||| || || || || ||||| | || || ||||||||||||||||| | | Sbjct 21628 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 21687 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || || || ||||||||||| || || || || Sbjct 21688 AAG-GTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGG 21746 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || || || ||| | ||||| || || || ||||| || Sbjct 21747 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAAC 21806 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 21807 CTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || |||| || | ||| || ||||||||||||||||| | || || || Sbjct 22146 AGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGT 22205 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||||| ||||| | | || || || ||||| || ||| Sbjct 22206 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCC 22265 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| || || ||| | || || ||||| || ||||| || || |||||| Sbjct 22266 TTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTG 22325 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || | ||||| ||||| ||||||||| Sbjct 22326 ATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || | |||||||| || || || ||||| ||| Sbjct 24153 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAG 24212 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||| ||||| || || ||||||||||||||||| || || || ||| | Sbjct 24213 ATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTC 24272 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| ||||| || || || || |||||||| || || ||||| || || ||| Sbjct 24273 TCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACG 24332 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 24333 AAGATTTGCAT 24343 Score = 136 bits (150), Expect = 8e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| |||||||| || || || || ||||| || ||||||||||||||||| Sbjct 23012 TTACCGGCGAAGATCAAGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTG 23071 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || |||||||| ||||| ||||| ||||| || ||| Sbjct 23072 GCCTTCACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCAGTC 23131 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| |||||||| Sbjct 23132 AAAGTCTTGACGAAGATCTGCAT 23154 Score = 134 bits (148), Expect = 3e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||| || || || || || || ||||||||||||||||| Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| || || || |||||||||||||| ||||| ||||| || ||| Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 |||||||| ||||| || |||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || || || ||||| || ||||| || |||||||| Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | || ||||| || ||||||||||||||||| ||||| ||||| || || Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | || || ||||| ||||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCATT 23886 Score = 100 bits (110), Expect = 6e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | || || ||||| || ||||| || Sbjct 24009 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACC 24068 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| ||||| || || | |||||| ||||| ||||||||| Sbjct 24069 TCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATT 24116 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || ||||| || || ||||| || || ||| | ||||| ||||| ||||||||| Sbjct 22542 GGGATTCCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGCTTCG 22601 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 22602 ACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 22651 >seq611 Length=39809 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 ||||||||||||||||| || |||||||| || || |||||||| |||| || | |||| Sbjct 21349 CAAGCGTCGACATCGGAATTATACGGAAAAGTACAAGAGATTCCACAAAGTGAGAAGACT 21408 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || || ||||| | |||||||| ||| || || | || | || |||||| Sbjct 21409 CCATTCTATCCAAGATCTCCATATGCTGTTGCCAAAATGTACGGATACTGGATTGTGGTC 21468 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 || ||||| ||| | || ||||||| || ||| ||| |||||||| || ||| Sbjct 21469 AACTATCGTGAGGCCTACAACATGTTCGCCTGCAATGGAATTCTCTTCAATCATGAGAGT 21528 Query 44164 CC 44165 || Sbjct 21529 CC 21530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046534529448694