Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1197 156 3e-33 seq1737 141 7e-29 >seq1197 Length=26491 Score = 156 bits (172), Expect = 3e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| ||| |||||||||||||||||| Sbjct 22130 TTGCATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTA 22189 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || | || || |||||||| ||||| ||||| | | ||||||||| Sbjct 22190 GTCGGAGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATC 22249 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| || | | |||| | |||||||| | || Sbjct 22250 TGGTGGAATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCAGAGG 22308 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | || || |||||||| |||||||||||||||||||| ||||| Sbjct 22309 CTTCAACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 136 bits (150), Expect = 3e-27 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || ||||| || |||||||||||||||||| |||| | || | ||| |||| || Sbjct 21646 ACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGT-GCGTCCGTCCTC 21704 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || |||||||||||||||||||||| || | |||||||| || Sbjct 21705 GAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTG 21764 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || || | | |||| | ||||| || | || ||| ||||| | || || |||| Sbjct 21765 GAT-TTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCT 21823 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| ||||| |||||||| ||||| Sbjct 21824 TTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | || || || || || |||||| |||||||||||||| Sbjct 23380 CATACCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATC 23439 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | ||| | || || |||||||| ||||| ||||| | | |||||||||| Sbjct 23440 AGACAAGGT-GCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTG 23498 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| || ||||| || | | |||| | ||||| |||| | | Sbjct 23499 GTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTATCGGAAGCT 23557 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || |||||||| ||||||||||| |||||||| ||||| Sbjct 23558 TCGACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 23610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 |||| ||||| |||||||| ||||||||||||| || | |||||||| || |||| Sbjct 23010 GCTTACCGGCGAAGATCAAGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCT 23069 Query 44253 TCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 | |||| | |||| | |||||||| | || ||| ||||| | || || |||||||| Sbjct 23070 TGGCCTTC-ACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCA 23128 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||||| |||||||| ||||| Sbjct 23129 GTCAAAGTCTTGACGAAGATCTGCAT 23154 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||||||||||||||||||||||| || | |||||||| || ||||| Sbjct 21992 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 22051 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 || | | |||| | ||||| |||| || ||| || || | || || |||||||| | Sbjct 22052 -GGCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAG 22110 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||| |||||||||||||| Sbjct 22111 TCAAAGTCTTGACGAAGATTTGCAT 22135 Score = 95.1 bits (104), Expect = 9e-15 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | || || || || || |||||| ||||||||||| || Sbjct 24113 CATTCCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 24172 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || |||||||| ||||| ||||| | | ||||| ||| Sbjct 24173 CGAAAGAGTT--CTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCT 24230 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | || ||||| || || || ||| | |||| | |||||||| | | Sbjct 24231 GGTGGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGAC-GTTCTCGATGGTGTCAGAAGC 24289 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||||| || ||||| ||||| || | || || ||||||||||||||||| Sbjct 24290 CTCCACCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGAT 24346 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 |||| ||||| ||||| | | ||||||||||| || | |||||||| ||| |||| Sbjct 23741 GCTTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCT 23800 Query 44253 TCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 | |||| | |||| | || || || | | ||| || || | || || |||||||| Sbjct 23801 TGGCCTTC-ACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCA 23859 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||||||||| ||||| Sbjct 23860 GTGAGGGTTTTCACGAAGATCTGCAT 23885 Score = 82.4 bits (90), Expect = 5e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 44215 CTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGG 44273 ||| ||||||| || | |||||||| ||| ||||| ||| | |||| | |||| Sbjct 22529 CTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTGGCCTTGAC-GTTCTCGATGG 22587 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 |||||| | ||| ||||| | || || |||||||| ||||||||||| |||||||| | Sbjct 22588 TGTCGGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCT 22647 Query 44334 GCAT 44337 |||| Sbjct 22648 GCAT 22651 >seq1737 Length=20200 Score = 141 bits (156), Expect = 7e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| ||||||||||| |||| ||| || | || || Sbjct 9800 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCA 9859 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| |||||||| || |||||||||| || | |||||||| ||| Sbjct 9860 AGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGG 9919 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| | || ||||| | ||||||||||| Sbjct 9920 ATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTA 9979 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| || ||||| |||||||||||||||| Sbjct 9980 CCCGTCAGAGTCTTGACGAAGATTTGCATGA 10010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359923444148037