Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq253 84.2 3e-11 >seq253 Length=65330 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63748 CCAGAAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATGATT 63807 ||| |||| ||||| || || || ||| | | |||||| |||||| ||||| || Sbjct 30870 CCACAAATCGGTGACAAGTTCGCCTCTCGTCATGGTCAAAAGGGTACGATGGGTATCATG 30929 Query 63808 TATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATCAAT 63867 ||||||||||||||||||||||| || || || | || ||| || | |||||| Sbjct 30930 TATCGACAAGAAGATATGCCTTTCACTGCGGAAGGACTTACTCCAGATATCATTATCAAT 30989 Query 63868 CCACACGCTTTTCCCAGTCGTATGAC 63893 || ||||| |||| ||||||||| Sbjct 30990 CCTCACGCCGTTCCATCTCGTATGAC 31015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666947947067160