Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1197 197 3e-45 seq1737 156 1e-32 >seq1197 Length=26491 Score = 197 bits (218), Expect = 3e-45 Identities = 175/219 (80%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || ||||||||||||||||| |||||||| || ||| Sbjct 24340 CAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCTGAC 24281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| || || || ||||| || |||||||| || ||||||||| Sbjct 24280 ACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAA 24221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| |||||||| |||||||| |||||| | || || ||| || Sbjct 24220 AGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAACATC 24161 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| | | |||||| Sbjct 24160 CAGAAGGAGTCGACTCTCCATCTCGTTCTCCGTCTCAGA 24122 Score = 178 bits (196), Expect = 3e-39 Identities = 163/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||||||||| ||||| || ||||| | || || || || ||| Sbjct 22876 CAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTCTGAC 22817 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| |||||||| || || ||||| ||| Sbjct 22816 ACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCAACAA 22757 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| |||||||| |||||||| ||||| |||| || || || Sbjct 22756 AGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAATATC 22697 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 22696 CAGAAGGAATCCACTCTCCA-CTTG 22673 Score = 174 bits (192), Expect = 4e-38 Identities = 172/220 (78%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||||||||| || ||| || || Sbjct 23607 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCCGAT 23548 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 23547 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 23488 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| |||||||||||||| ||||| || |||||| | || |||| | ||||| ||| | Sbjct 23487 AGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCAC-CTTGTCTGATTACAACAT 23429 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| || || || || || ||||| ||| | | |||||| Sbjct 23428 CCAGAAGGAGTCGACTCTCCATCTCGTTCTTCGCCTCAGA 23389 Score = 170 bits (188), Expect = 5e-37 Identities = 164/208 (79%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| ||||| || |||||||||||||| ||| ||| || Sbjct 21851 CAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCTGAT 21792 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| || || || ||||| ||||||||||| || || ||||| Sbjct 21791 ACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAG 21732 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| ||||| |||||||| || ||| | || |||| |||| || ||| | Sbjct 21731 CGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCAC-CTTGTCCGACTACAACAT 21673 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| || || || || ||||| ||| Sbjct 21672 CCAAAAGGAGTCGACCCTTCATCTCGTT 21645 Score = 170 bits (188), Expect = 5e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || ||||| || ||||| ||| ||| ||| Sbjct 22360 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTCTGAC 22301 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| |||||||| || || || ||||| Sbjct 22300 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 22241 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| |||||||| |||||| | || || |||| || ||| || Sbjct 22240 AGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAACATC 22181 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || | ||| | | |||||| Sbjct 22180 CAAAAGGAGTCCACCCTTCACTTGGTTCTCCGCCTCAGA 22142 Score = 159 bits (176), Expect = 8e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || ||||||||||| || ||| ||| || Sbjct 23379 CAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCCGAT 23320 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| ||||||||||| || || || || Sbjct 23319 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAACAG 23260 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||||||||||| ||||| |||||||| ||||| |||| || || || Sbjct 23259 AGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAATATC 23200 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 23199 CAGAAGGAATCCACTCTTCA-CTTGGTT 23173 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || |||||||||||||| ||| ||| ||| Sbjct 23151 CAGATCTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTCGAAGCCTCTGAC 23092 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| || ||||| |||||||| || || || ||||| Sbjct 23091 ACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAGCAG 23032 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||||||||| || Sbjct 23031 CGCTTGATCTTCGCCGGTAA 23012 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || ||||| || ||||||||||| || ||| ||| || Sbjct 22132 CAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCCGAT 22073 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| ||||||||||| || || ||||| Sbjct 22072 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAG 22013 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| || || || Sbjct 22012 CGTTTGATCTTTGCTGGTAA 21993 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || |||||||||||||| ||| || ||| Sbjct 22648 CAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCCGAC 22589 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||||||||| || ||||||||||| || || || || Sbjct 22588 ACCATCGAGAACGTCAAGGCCAAGATTCAGGATAAGGAAGGAATCCCACCAGATCAACAG 22529 Query 178044 CGACT 178048 |||| Sbjct 22528 AGACT 22524 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| ||||| || ||||| ||||| || ||| ||||| Sbjct 23882 CAGATCTTCGTGAAAACCCTCACTGGAAAGACCATCACACTCGAAGTCGAAGCTTCAGAT 23823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 23822 ACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCAGATCAGCAG 23763 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||||||||| || Sbjct 23762 AGACTCATCTTCGCCGGTAA 23743 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||||||| ||||| || ||||| || ||||| ||| ||| ||| Sbjct 24112 CAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTCTGAC 24053 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 24052 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAAT 24009 >seq1737 Length=20200 Score = 156 bits (172), Expect = 1e-32 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || ||||| ||||||||||| || || || Sbjct 10005 CAAATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTCCGAT 9946 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| |||||||| || || || |||||| Sbjct 9945 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAA 9886 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || || || |||||| | ||||| |||| || ||| || Sbjct 9885 CGCTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGTACTCTCTCCGACTACAACATC 9826 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 9825 CAGAAGGAGTCCACCCTTCA-CTTGGTT 9799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203495832557634