Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1737 114 1e-20 seq1197 102 8e-17 >seq1737 Length=20200 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 9782 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 9841 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || ||||| |||||||| |||| ||| || || || | ||| Sbjct 9842 AGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGA 9901 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | || ||| | ||| ||| Sbjct 9902 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACC 9961 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| ||||||||||| ||||| ||||| || |||||| Sbjct 9962 TCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATG 10009 >seq1197 Length=26491 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||||||| ||||| ||||| || || || | Sbjct 24126 AGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTT 24185 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| |||||||| || || | || ||||| | || | | |||| Sbjct 24186 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCC 24245 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | ||||| | ||||||||||| || Sbjct 24246 TTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTG 24305 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || |||| ||| || ||||| || |||||| Sbjct 24306 ATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATG 24344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| |||||||| || || ||||||||| Sbjct 22653 CCTCCACGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 22712 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || ||||||||||| |||||||| || || | |||||||| | ||| Sbjct 22713 AGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGA 22772 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | || | | ||||| | ||| || Sbjct 22773 ATTCCTTCCTTGTCC-TGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGAC 22831 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || || || |||||||||||||| Sbjct 22832 TTCCAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||||| | | || || || ||||| | || ||||| || || |||||| || ||||| Sbjct 21619 TACAT-ATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTT 21677 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 |||||||| | |||||| |||| ||||||||||| || ||||| |||| ||||| || Sbjct 21678 GTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTG 21737 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCT 41805 || | || | | |||||||| |||||| ||| | | | || || Sbjct 21738 ATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGA 21797 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 21798 GGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| |||||| || ||||| |||||||||||||| || | || ||| Sbjct 22155 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCCTCG 22214 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || | ||| || || | |||| | |||||||| | Sbjct 22215 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 22274 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || ||||| | || ||||| | || || || Sbjct 22275 ATCTTGGCCTT----GACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGT 22330 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| |||||||| Sbjct 22331 CTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462215809733200