Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq626 105 7e-18 >seq626 Length=20921866 Score = 105 bits (116), Expect = 7e-18 Identities = 222/328 (68%), Gaps = 16/328 (5%) Strand=Plus/Minus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| || || |||||| ||||| || ||||| ||| || ||||| | ||| || || Sbjct 3165025 GATGAGCTCATTAGAATGGGTCAAACCCGGCATAAGTCCACGCTTCTTGAGCCAGAAGAT 3164966 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 || ||||||||| || ||||| ||||||||||||| || || ||||| | |||||| Sbjct 3164965 CGAGGCGAACGATCCGCTGAAGAAGATACCCTCGACGGCGGCGAAAGCGATGAGTCGTTC 3164906 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT 17178 |||| ||| ||| | |||| |||||| | |||| ||||| || | ||| || Sbjct 3164905 GGCGAACGACGCTTTCTTGTCTGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGAT 3164846 Query 17179 GCAATCCA--TCGTTTCTATGGCCTT--AAATAATTT----CTCTTTTTCCTGTAGGTCG 17230 | || | ||| ||||| || ||| | | | ||| | || | || Sbjct 3164845 AAACTCGAATTCG--AAGATGGCGTTGAAAAGAGTGTGACGCTCCGTCTCATCACGG--- 3164791 Query 17231 ATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATC 17290 |||||||| || ||||| |||||| || || || || ||||| ||||| || Sbjct 3164790 ---ATATACGTCTCAATGAGCTTCGAGTACATCTCCGAATGAATATTCTCGATGGCGATT 3164734 Query 17291 TGAAATCCGTAAAAGCATCGGGCTTCCG 17318 || |||||||| ||| | ||||| |||| Sbjct 3164733 TGGAATCCGTAGAAGAAACGGGCCTCCG 3164706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541297902200