Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq626 179 4e-40 seq625 93.3 5e-14 >seq626 Length=20921866 Score = 179 bits (198), Expect = 4e-40 Identities = 477/723 (66%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||||||||| |||||||| | ||| | ||| || || || || ||||||| ||| Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || || | || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGC 54126 ||||| | | | | ||||| | | || || ||||| |||| ||| |||| | Sbjct 6579758 CAGATCACGAGCAC---GCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTC 6579702 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | ||| | ||||| || || | ||| |||| | | |||| || || |||||||| Sbjct 6579701 GAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCC 6579642 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||||||| | || | ||| ||||| || || || | | ||| || || | ||||| Sbjct 6579641 TCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATT 6579582 Query 54247 GGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAA--TTGA 54303 ||| | |||||||| |||| || | || | || | || ||||| || | |||| Sbjct 6579581 GGAAGTTCCATTGGTTCCGGCAATGACAGAT-CCTGTAGCGCGAATCTTGTGGACGTTGA 6579523 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | || || || || || | || ||||| | || || | || || ||||| ||||| Sbjct 6579522 --GTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGAT 6579465 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || || ||| || |||| | || || || || ||||| || | |||| Sbjct 6579464 TCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACA 6579405 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||||| | || || | || || ||||| ||||| | || || || | ||||| Sbjct 6579404 TGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATT 6579345 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 |||||||||||| || | | || | | | ||||| || | ||||||||||| || Sbjct 6579344 GTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAA 6579285 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| || || || | ||||||| | ||||| || ||||| | || || || | Sbjct 6579284 CATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAG 6579225 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| || || || || || |||| ||| |||| || || |||| || | ||||| || Sbjct 6579224 AGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAG 6579165 Query 54664 TTT 54666 || Sbjct 6579164 CTT 6579162 Score = 132 bits (146), Expect = 6e-26 Identities = 281/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 52832 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 52891 || |||||||| | ||||||||||| || || || || ||||||||||||| ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 52892 ATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 52951 || ||| | || || ||||| | || |||||||| || | |||||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 52952 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 53011 |||||||| || || | || |||||||| | |||||| ||||||| || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCAC 6580994 Query 53012 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATAGATCCA 53068 | ||| || | | ||| ||||| ||||| | | | |||||||| |||||| Sbjct 6580995 ACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Query 53069 CCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 53128 | | || | | |||||| |||||||| |||| ||| ||| || || | Sbjct 6581055 TTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTCC 6581114 Query 53129 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 53188 | || | || ||||| || | || || || || || | || | |||| ||| || Sbjct 6581115 TTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATG 6581174 Query 53189 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 53247 || || || || || | ||||| || ||||| | |||||||||||| || || || Sbjct 6581175 TTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Score = 113 bits (124), Expect = 5e-20 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 52797 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 ||||||| | |||||||||| | | | || || |||||||| | |||||||||| Sbjct 6571239 CCTTGTCGACGGTGAATTGAACAGCATTGACGGCTGGCTTCGTACGCAAGTAGTACATTC 6571298 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || || || ||||||||||||| ||||| ||| | || || |||| Sbjct 6571299 CAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCGGCGTAGCTCG 6571358 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | | || |||||||| || | |||||| |||||||||||| || || | || |||| Sbjct 6571359 GCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCACGATCAGCAG 6571418 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 53036 |||| | |||||| ||| |||| || ||||| | ||| || | | ||| |||| Sbjct 6571419 CCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAGTGCGGTACAGTTCCTTGATAT 6571478 Query 53037 CTTCTGG 53043 | ||||| Sbjct 6571479 CATCTGG 6571485 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 ||| ||||| |||||||| ||||| || || || || || || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 |||||| || |||| || | || || || | | | | | |||| | || | ||| Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 ||| ||||||||||| || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 |||||||||||| | || || |||||||||||||| | ||| |||||| | || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCTTTGATGAT 3165162 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 |||||||||||| || | ||| ||| | || |||| || |||||| ||| || || Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| || || | || ||||||||| ||||| Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6572685 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 |||||||||||| || | ||| ||| | || |||| || |||||| ||| || || Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| || || | || ||||||||| ||||| Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6585102 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 |||||||||||| || | ||| ||| | || |||| || |||||| ||| || || Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| || || | || ||||||||| ||||| Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23251535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 23252763 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23252704 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 ||||||||| || || | ||| ||| | || |||| || |||||| || || || Sbjct 23252703 CGGATGTTGGGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGCTCCACAGT 23252644 Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| || || | || ||||||||| ||||| Sbjct 23252643 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23252605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716664689200