Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq626 136 4e-27 seq549 125 7e-24 seq542 125 7e-24 seq625 109 6e-19 >seq626 Length=20921866 Score = 136 bits (150), Expect = 4e-27 Identities = 248/359 (69%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||| || ||| | | || ||| ||||| | ||||| || | ||||||||| || || || Sbjct 3164677 CGAACGCTTCTCGAATGAAGTGAAGGTGTCGGAGGCCCGTTTCTTCTACGGATTCCAAAT 3164736 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTC 116925 |||||| ||||| | || ||||| ||||| |||| ||||| || ||||| | || Sbjct 3164737 CGCCATCGAGAATATTCATTCGGAGATGTACTCGAAGCTCATTGAGACGTATATCCGTGA 3164796 Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGT--CAAAGAG 116983 | | |||| | | | | || ||||||||| ||| || | | ||| || Sbjct 3164797 TGAGACGGAGCGTCACACTCTTTTCAACGCCATCTT--CGAATTCGAGTTTATCAAGAAG 3164854 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || |||||||| | | || | || | |||| ||| || || Sbjct 3164855 AAGGCCGACTGGGCTCTTCGCTGGATTTCAGACAAGAAAGCGTCGTTCGCCGAACGACTC 3164914 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 | || ||||| ||||||||||| ||||||| || |||||| | || || ||| Sbjct 3164915 ATCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGATCGTTCGCCTCGATCTTCTGG 3164974 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGA--CTTTCAGCAACGAGCTCATCTCCAGG 117160 |||||||| || || || ||||| || ||| | ||| || ||||||||||| ||| Sbjct 3164975 CTCAAGAAGCGTGGACTTATGCCGGGTTTGACCCATTC--TAATGAGCTCATCTCGAGG 3165031 >seq549 Length=112515 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || || |||||| | Sbjct 112124 AATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTC 112065 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||||||||| ||||| | || | Sbjct 112064 TGACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATC 112006 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | |||| ||| || || || || || || | ||||| | |||||||| Sbjct 112005 AGCAACGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACA 111946 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| |||||| | || || ||||| || Sbjct 111945 ACATCCAAAAGGAGTCAACCCTCCATCTCGT 111915 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || || ||||||||| | || ||||| || | Sbjct 112348 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 112289 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| |||| ||||| | || || Sbjct 112288 GACACCATTGAGAACG-TCAAGGCCAAGATTCAAGACAAGGAGGA-ATCCCA-CAGATCA 112232 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || ||||| || || | ||||| | || ||||| Sbjct 112231 GCAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAA 112172 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| |||| || || Sbjct 112171 CATCCA-AAGGAATCCACTCTCCA 112149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| ||||| ||||| | ||||||||| || | || Sbjct 112504 AACG-TCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAAAGATTGAT 112446 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| || || ||||| || |||| | || ||| |||||||| ||||||||||| Sbjct 112445 CTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTCTCTGACTACAATATCCAGAAGGA 112386 Query 40881 GGCCACGCTGCAT 40893 |||| || ||| Sbjct 112385 ATCCACTCTTCAT 112373 >seq542 Length=114868 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || || ||||| | Sbjct 76909 AATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTTGAAGCTTC 76850 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| |||||| || || | ||||| ||||| ||||| | |||| Sbjct 76849 TGATACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACC 76791 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| |||| |||| ||| || || ||||| || |||| | || ||| ||||||| Sbjct 76790 AGCAGAGACTTATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTCTCTGACTACA 76731 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | |||||||||||| |||| || ||||| || Sbjct 76730 ATATCCAGAAGGAGTCCACTCTCCATCTCGT 76700 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||| | || || |||||||||||| | || || || || | Sbjct 77639 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCT 77580 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| || || | ||||| || || ||||| | |||||| Sbjct 77579 GATACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 77520 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || ||||| || || | | || ||| |||||||| Sbjct 77519 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAAT 77460 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 77459 ATCCAGAAGGAGTCCACTCTCCATCTCGT 77431 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || || ||||| || | || ||||||||| | Sbjct 76681 AATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTC 76622 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| |||||| || || | ||||| || || ||||| | || | Sbjct 76621 TGACACTATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 76563 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| || | |||| ||| || || || || || || | || |||||| ||||||| Sbjct 76562 AGCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACA 76503 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || || || Sbjct 76502 ACATCCAGAAGGAGTCGACTCTTCA 76478 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || ||||| || || Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| ||||| | || || Sbjct 76112 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCA 76054 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || || || || || || | || ||||| ||||||||| Sbjct 76053 ACAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAA 75994 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || | || | || ||||| || || Sbjct 75993 CATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGG 75946 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || || || || ||||| | || ||||| || | Sbjct 77138 AATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTC 77079 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| |||||| || |||| ||||| || || ||||| | || | Sbjct 77078 CGACACCATTGAGAACG-TCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATC 77020 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| || | |||| ||| || || ||||| || || | ||||| | |||||||| Sbjct 77019 AGCAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACA 76960 Query 40868 ACATCC-AGAAGGAGGCCACGCTGCA 40892 |||||| | ||||| |||| || || Sbjct 76959 ACATCCAAAAAGGAATCCACTCTTCA 76934 >seq625 Length=33334924 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || || ||| |||| ||||| ||| || Sbjct 31078860 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 31078919 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| || || || || | || ||| Sbjct 31078920 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 31078979 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| |||| ||| || || || || || || | || || ||| |||||||||| Sbjct 31078980 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 31079039 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 31079040 ATCCAAAAGGAGTCGACTCTCCA 31079062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214917240400