Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq549 96.9 3e-15 seq542 93.3 4e-14 >seq549 Length=112515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || || ||| || |||||||||| || |||||| |||||| Sbjct 112143 ACCAAGTGGAGAGTGGATTCCTTTGGA-TGTTGTAATCCGACAAAGTGCGACCATCCTCA 112201 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | | |||||||| | || || ||||||||||| | Sbjct 112202 AGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATC-TGTGGGAT-TCCTCCTTGTCTTGA 112259 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | |||||| || | ||| | || || Sbjct 112260 ATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTT 112319 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| |||||| || || |||||||| Sbjct 112320 CCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 >seq542 Length=114868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | || || |||||| Sbjct 75964 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTCA 76023 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||| | ||| || ||||| || || || |||||||||||| Sbjct 76024 AGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGG 76083 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | |||||| || | ||| | || || Sbjct 76084 ATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTTT 76143 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 76144 CCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826883940180