Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq542 122 7e-23 seq549 86.0 5e-12 >seq542 Length=114868 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | |||||||| || || ||||||||| |||||||||||| Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || ||||| ||||||||||| ||||| || ||||| || || || Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| || || ||| || | | | | |||| | |||| || Sbjct 76066 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACT 76125 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || |||| |||||| || ||||| ||||| Sbjct 76126 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCT-GAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||||| || ||| ||||| | | |||||||||||| || |||| | || || Sbjct 76928 ACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTC 76987 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||||||||| ||||| | || || || || || | || |||||||| Sbjct 76988 AAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTG 77047 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | |||| | |||| || |||| || |||||||| Sbjct 77048 AATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGTCTT 77107 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| ||||| Sbjct 77108 TCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 >seq549 Length=112515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || |||||||||||| || |||| | || || ||||| ||||||||||| Sbjct 111932 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAA 111991 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || || || || || || || || | ||||| ||||| || || ||| || Sbjct 111992 GATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 112051 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | || ||||| | ||| || ||||| || || |||||||| || Sbjct 112052 CTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGAC 112111 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 112112 GAAGATCTGCAT 112123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071998038965