Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq626 244 9e-60 seq625 82.4 7e-11 seq542 82.4 7e-11 >seq626 Length=20921866 Score = 244 bits (270), Expect = 9e-60 Identities = 497/729 (68%), Gaps = 28/729 (4%) Strand=Plus/Minus Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACATGAG 23322 || ||||| || | || | |||||| | || || |||| | |||| || ||||| || Sbjct 6579880 GCTTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGG-CACATCAG 6579822 Query 23323 ACTCCACAT--TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 ||| || ||| || || || ||||| |||| || || ||||| | ||| ||||| Sbjct 6579821 CGACCA-ATCCTGA-TCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCC 6579764 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 |||||| || || || ||| |||| ||| ||||||||||| | | | | || Sbjct 6579763 AGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAAC 6579704 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || || || || ||||| ||||| ||||| | ||| || || || || | ||| || Sbjct 6579703 TCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTT 6579644 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || |||||||| || ||||| || ||||||||||| || | |||||||| | ||| || Sbjct 6579643 CCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCA 6579584 Query 23561 TTGGACGCGCC---GCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| | || | | || | ||| || ||| | || |||| ||||| ||| Sbjct 6579583 TTGGAAGTTCCATTGGTTCCGGCAATGACA---GATCCTGTAGCGCGAATCTTGTGGACG 6579527 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | || || || |||||| | ||||| || | || || || |||| || |||||| Sbjct 6579526 TTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAG 6579467 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 || || || ||||| | | | || || ||| ||||| ||||| || || Sbjct 6579466 ATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACAT-----CTGTG 6579412 Query 23738 GGC-----GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 ||| || | | ||| || || ||| || ||||| | ||||| | ||||| Sbjct 6579411 GGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACA 6579352 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 | ||||||||||| |||||||| || | ||||| ||||||||| |||||||||||||| | Sbjct 6579351 TCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACAC 6579292 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC---GTTAATTTTGAACAGATATG 23909 |||||| ||| | ||| || | ||| || ||| | ||| || || | ||||| | Sbjct 6579291 GCATCAACATCTGTTGTGGCCGCTCAAC---GACTTCTTTGTTGATCTTCAGAAGATACG 6579235 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 |||| | | || || ||||| || || ||| | |||||||||| | || |||| Sbjct 6579234 AACGCTCAAGAGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGG 6579175 Query 23970 CCGAATTCA 23978 | || |||| Sbjct 6579174 CAGAGTTCA 6579166 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 23752 GAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGAT 23811 ||| || || ||| || ||||| | ||||| | |||||| ||||||||||| ||||| Sbjct 6573423 GAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATTGTACGTCTCGAT 6573482 Query 23812 GGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGG 23871 ||| || | ||||| ||||||||| |||||||||||||| ||||||| ||| | ||| || Sbjct 6573483 GGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAACATCTGTTGTGG 6573542 Query 23872 TCTCTCGACCGTGACGCC---GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAA 23928 | ||| || ||| | ||| || || | ||||| ||||| | | || || || Sbjct 6573543 CCGCTCAAC---GACTTCCTTGTTGATCTTCAGAAGATACGAACGCTCAAGAGTCTTGAA 6573599 Query 23929 TCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 ||| || || ||| | |||||||||| | | ||||| || |||| Sbjct 6573600 TCCGAAGTAAGTGTAGGAATAGTCACGATCATAATCGATGGCAGAGTTCA 6573649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220 || |||||||| || || |||| || || ||| | || ||| | || || |||| || Sbjct 3165147 GAGCGCATCTTCGAGATCATCAAAGACGCCGTCACCATTGAACAAGAATTCCTCACAGAG 3165206 Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280 || || || || | ||| |||| ||||| | | ||||||| | |||||||||||| Sbjct 3165207 GCTCTTCCAGTCGATATGATCGGAATGAATTGTCGTCTGATGTCCCAATACATTGAGTTT 3165266 Query 58281 GTTGCCGACAGACTTTTGCTCGAACTGATTGGA---GAGCGTCATTACAACACGAAAAAT 58337 || ||||| | ||||||| || | | ||| || | ||||| || || Sbjct 3165267 GTCGCCGA---TCATTTGCTCCAAGAGCTCGGATGTGACAAACTGTACAAAGTCAAGAAC 3165323 Query 58338 CCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaa 58397 || ||||| || ||| | || ||| |||| || ||||| ||||| ||||| ||| Sbjct 3165324 CCATTTGACTTCATGGAGAACATTTCGATCGACGGAAAGACCAACTTCTTCGAGAAACGT 3165383 Query 58398 GTTAGCGAATATCAA 58412 || |||||||||| Sbjct 3165384 GTCTCCGAATATCAA 3165398 >seq625 Length=33334924 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||||||||| || || || || ||| |||| || || | || Sbjct 31078859 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTC 31078918 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||||| | || || || || Sbjct 31078919 CGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 31078978 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || ||||| || || || | || || | | | ||| | ||| || | Sbjct 31078979 GCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGA-TGGACGTACTCTCTCCGACTACA 31079037 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || |||||||| || |||| || Sbjct 31079038 ACATCCAAAAGGAGTCGACTCTCCACTTGGTTCT 31079071 >seq542 Length=114868 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||| || || |||| || ||||| |||||| | || || || Sbjct 77644 CAATCATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGG 77585 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | |||||| ||||| | || ||||||||||| | || || | Sbjct 77584 CTTCTGATACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAG 77525 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || ||||| || || ||| | ||||| | ||| | || | Sbjct 77524 ACCAGCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACT 77465 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | || || || || || || ||||| ||||| || ||| Sbjct 77464 ACAATATCCAGAAGGAGTCCACTCTCCATCTCGTTCTT 77427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762694566800