Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq626 93.3 8e-14 >seq626 Length=20921866 Score = 93.3 bits (102), Expect = 8e-14 Identities = 174/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 |||||| ||| |||| ||||||| || || ||| | ||||| || || || ||| Sbjct 6579515 TCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGATTCCGAGAAT 6579456 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGAC-TGTTCCAC 94909 ||| || | || ||||||||||| || | || || | ||| ||||||| Sbjct 6579455 CGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGG-GCGACATGTTCCAG 6579397 Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969 | || || || || ||||||||||| || | || || |||||| |||| || || | Sbjct 6579396 AGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATTGTACGTCT 6579337 Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 | ||| ||| || |||| ||||||||| |||| || |||||||| | ||| | | Sbjct 6579336 CGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAACATCTGTT 6579277 Query 95030 GAGGGCGCTCAAC 95042 | || |||||||| Sbjct 6579276 GTGGCCGCTCAAC 6579264 Score = 91.5 bits (100), Expect = 3e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 94870 AGAAGGAAGCACGAGGAAAGTTGGGGTGTGAC-TGTTCCACAATTAAACAGTGTGGGGGA 94928 || ||||||||||| || | || || | ||| ||||||| | || || || || ||||| Sbjct 6573379 AGCAGGAAGCACGACGACATCTGTGG-GCGACATGTTCCAGAGTTGAAGAGAGTTGGGGA 6573437 Query 94929 AGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTC 94988 |||||| || | || || |||||| |||| || || || ||| ||| || |||| Sbjct 6573438 AGCATGCGTCATGTATCGCTCCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTT 6573497 Query 94989 TGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||||||||| |||| || |||||||| | ||| | || || |||||||| Sbjct 6573498 CTCTCCGTGAATACCGATGGCGACACGCATCAACATCTGTTGTGGCCGCTCAAC 6573551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989575568435075