Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq626 91.5 1e-13 >seq626 Length=20921866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 270/409 (66%), Gaps = 13/409 (3%) Strand=Plus/Plus Query 36835 TAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTT 36894 || ||||||||||| || || ||| ||||||||||||| ||||| || | Sbjct 6580830 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCG 6580889 Query 36895 GCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCT 36954 ||||| | || || | |||| || | | ||||||| |||||| || || ||||| Sbjct 6580890 GCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCA 6580949 Query 36955 CTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATT 37014 | || || ||||| || | || |||||| ||||||||||| || || || | | Sbjct 6580950 CGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCACACAGTGCGGTACAGT 6581009 Query 37015 TGTTTTATATTATCTGGTAAATC-TAAATGT--TGAATAGAACCATT-ATGTAACACAAT 37070 | || |||| |||||| | | |||| ||||| || ||||| || | |||| Sbjct 6581010 TCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCATTGTTGGCAATCAAT 6581069 Query 37071 TGTATTCTTTATGTCATTATTCCACA----TATTTCTACTTATTAGTTCTCTCAATAGGT 37126 | |||||| || |||| |||||| | |||| || ||| || ||| | || Sbjct 6581070 CG-ATTCTTCATCTCATCGCTCCACAATCCTCTTTCAAC---CAAGTCCT-TCAGCATGT 6581124 Query 37127 GTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTAT 37186 ||||||| |||| ||| || || || || | || | || | || || || || | Sbjct 6581125 GTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATGTTCGATGTGT 6581184 Query 37187 ATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGT 37235 |||| ||||| ||||| || || | | ||||||| || || || || Sbjct 6581185 ATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520905387600