Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq626 170 3e-37 seq625 93.3 6e-14 >seq626 Length=20921866 Score = 170 bits (188), Expect = 3e-37 Identities = 475/723 (66%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| ||||| |||||||| | ||| | ||| || || || || ||||||| ||| Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || || | || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGC 66157 | ||| | | | | ||||| | | || || ||||| |||| ||| |||| | Sbjct 6579758 CAGATCACGAGCAC---GCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTC 6579702 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | ||| ||||| || || | ||| ||||| | | |||| || || |||||||| Sbjct 6579701 GAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCC 6579642 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 ||||||||| | || | ||| ||||| || || || | | ||| || || | ||||| Sbjct 6579641 TCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATT 6579582 Query 66278 GGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAATATTACTAA--TTGA 66334 ||| || |||||||| |||| || | || ||| | || ||||| || | ||| Sbjct 6579581 GGAAGTTCCATTGGTTCCGGCAATGACAG-ATCCTGTAGCGCGAATCTTGTGGACGTTG- 6579524 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || || ||||| || || | || ||||| | || || | || || ||||| ||||| Sbjct 6579523 -AGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGAT 6579465 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 || || ||| || |||| | || || || || ||||| || | |||| Sbjct 6579464 TCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACA 6579405 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||||| | || || | || || ||||| ||||| | || || || | ||||| Sbjct 6579404 TGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATT 6579345 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||||||||| || || | | || | | | ||||| || | ||||||||||| || Sbjct 6579344 GTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAA 6579285 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||| || || || | ||||||| | ||||| || |||| | || || || | Sbjct 6579284 CATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAG 6579225 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| || || || || || |||| ||| |||| || || |||| || | ||||| || Sbjct 6579224 AGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAG 6579165 Query 66695 TTT 66697 || Sbjct 6579164 CTT 6579162 Score = 132 bits (146), Expect = 6e-26 Identities = 281/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 64863 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 64922 || |||||||| | ||||||||||| || || || || ||||||||||||| ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 64923 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 64982 || || | || || ||||| | || |||||||| || | |||||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 64983 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 65042 |||||||| || || | || |||||||| | |||||| ||||||| || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCAC 6580994 Query 65043 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCA 65099 | ||| || | | ||| ||||| ||||| | | | |||||||| |||||| Sbjct 6580995 ACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Query 65100 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 65159 | || || | | |||||| |||||||| |||| ||| ||| || || | Sbjct 6581055 TTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTCC 6581114 Query 65160 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 65219 | || | || ||||| || | || || || || || | || | |||| ||| || Sbjct 6581115 TTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATG 6581174 Query 65220 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 65278 || || || || || | ||||| || ||||| | |||||||||||| || || || Sbjct 6581175 TTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Score = 109 bits (120), Expect = 7e-19 Identities = 210/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 ||||||| | |||||||||| | | | || || |||||||| | |||||||||| Sbjct 6571239 CCTTGTCGACGGTGAATTGAACAGCATTGACGGCTGGCTTCGTACGCAAGTAGTACATTC 6571298 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || || || ||||||||||||| ||||| || | || || |||| Sbjct 6571299 CAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCGGCGTAGCTCG 6571358 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | | || |||||||| || | |||||| |||||||||||| || || | || |||| Sbjct 6571359 GCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCACGATCAGCAG 6571418 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 65067 |||| | |||||| ||| |||| || ||||| | ||| || | | ||| |||| Sbjct 6571419 CCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAGTGCGGTACAGTTCCTTGATAT 6571478 Query 65068 CTTCTGGAA---GGTTTGTATTCTGAATGGA-TCCACCATCTGCCATAATCCTATTCTTG 65123 | ||||| | | | |||||||| || |||| | || || | | |||||| Sbjct 6571479 CATCTGGGATTCCGGCGATGTTCTGAATTGATTCCATTGTTGGCAATCAATCGATTCTTC 6571538 Query 65124 ATCTCATC 65131 |||||||| Sbjct 6571539 ATCTCATC 6571546 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 35869 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 35928 ||| ||||| |||||||| ||||| || || || || || || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 35929 CATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 35988 |||||| || ||||| || | || || || | ||| | | |||| | || | ||| Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 35989 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 36048 ||| |||||||| || || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 36049 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 |||||||||||| | || || |||||||||||||| | ||| |||||| | || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCTTTGATGAT 3165162 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 ||| || || | ||||| | || || ||||| |||||||| || | || ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 66967 ||| ||||| || || | || ||||||||| ||||| Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6572685 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 ||| || || | ||||| | || || ||||| |||||||| || | || ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 66967 ||| ||||| || || | || ||||||||| ||||| Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6585102 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 ||| || || | ||||| | || || ||||| |||||||| || | || ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 66967 ||| ||||| || || | || ||||||||| ||||| Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23251535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 ||| || || | ||||| | || || ||||| |||||||| || | || ||||| || Sbjct 23252763 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23252704 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 ||||||||| || || | ||| ||| | || ||||||| |||||| || || || Sbjct 23252703 CGGATGTTGGGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGCTCCACAGT 23252644 Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 66967 ||| ||||| || || | || ||||||||| ||||| Sbjct 23252643 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23252605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167328938600