Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq626 201 2e-46 seq625 89.7 7e-13 >seq626 Length=20921866 Score = 201 bits (222), Expect = 2e-46 Identities = 482/723 (67%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| ||||| |||||||| ||||| | ||| || || ||| || ||||||| ||| Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| || ||| | || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGC 80036 ||||| | | | ||||||| | | || || ||||| |||| ||| |||| | Sbjct 6579758 CAGATCACGAGCAC---GCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTC 6579702 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | | ||| | ||||| || || | ||| ||||| | | |||| || || |||||||| Sbjct 6579701 GAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCC 6579642 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 ||||||||| | || | ||| ||||| || || || | | ||| || || | ||||| Sbjct 6579641 TCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATT 6579582 Query 80157 GGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAA--TTGA 80213 ||| || |||||||| |||| || | || ||| | || ||||| || | ||| Sbjct 6579581 GGAAGTTCCATTGGTTCCGGCAATGACAG-ATCCTGTAGCGCGAATCTTGTGGACGTTG- 6579524 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || || ||||| || || | || ||||| | || || | || || ||||| ||||| Sbjct 6579523 -AGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGAT 6579465 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 || || ||| || |||| | || || || || ||||| || | |||| Sbjct 6579464 TCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACA 6579405 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||||| | || || | || || ||||| ||||| | || || |||| ||||| Sbjct 6579404 TGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATT 6579345 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||||| || || | || || | | | ||||| || | ||||||||||| || Sbjct 6579344 GTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAA 6579285 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||| || || || | ||||||| | || || || |||| | || || || | Sbjct 6579284 CATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAG 6579225 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||| || || || || || |||| ||| |||| || || |||| || | ||||| || Sbjct 6579224 AGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAG 6579165 Query 80574 TTT 80576 || Sbjct 6579164 CTT 6579162 Score = 134 bits (148), Expect = 2e-26 Identities = 282/420 (67%), Gaps = 3/420 (1%) Strand=Plus/Plus Query 78742 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGC 78801 || |||||||| | ||||||||||| || || || || |||||||||| || ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 78802 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 78861 || || | || || ||||| | || |||||||| || | |||||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 78862 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 78921 |||||||| || || | || |||||||| | |||||| ||||||| || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCAC 6580994 Query 78922 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCA 78978 | ||| || | | ||| ||||| ||||| | | | |||||||| |||||| Sbjct 6580995 ACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Query 78979 CCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACT 79038 | || || | | |||||| ||||| || |||| ||| ||| || || | Sbjct 6581055 TTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTCC 6581114 Query 79039 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 79098 | || | || ||||| || | || || || || || | || | |||| ||| || Sbjct 6581115 TTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATG 6581174 Query 79099 TTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTT 79158 || || ||||| || | ||| || || ||||| | |||||||||||| || |||||| Sbjct 6581175 TTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGTT 6581234 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| ||||| |||||||| ||||| || || || ||||| || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 |||||| ||||| || || | || || || | ||| | | |||| | || | ||| Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 ||| |||||||| || || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 |||||||||||| | || || |||||||||||||||| || || ||| | || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCTTTGATGAT 3165162 Score = 104 bits (114), Expect = 3e-17 Identities = 171/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 78707 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 ||||||| | |||||||||| | | | || || |||||||| | |||||||||| Sbjct 6571239 CCTTGTCGACGGTGAATTGAACAGCATTGACGGCTGGCTTCGTACGCAAGTAGTACATTC 6571298 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || || || |||||||||| || ||||| || | || || |||| Sbjct 6571299 CAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCGGCGTAGCTCG 6571358 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | | || |||||||| || | |||||| |||||||||||| || || | || |||| Sbjct 6571359 GCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCACGATCAGCAG 6571418 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | |||||| ||| |||| || ||||| | ||| || | | ||| |||| Sbjct 6571419 CCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAGTGCGGTACAGTTCCTTGATAT 6571478 Query 78947 CTTCTGG 78953 | ||||| Sbjct 6571479 CATCTGG 6571485 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| || || | |||||| | || || ||||| ||||| || || | || ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 ||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 80846 ||| ||||| || || | || ||||||||| ||||| Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6572685 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| || || | |||||| | || || ||||| ||||| || || | || ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 ||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 80846 ||| ||||| || || | || ||||||||| ||||| Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6585102 >seq625 Length=33334924 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| || || | |||||| | || || ||||| ||||| || || | || ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 ||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 80846 ||| ||||| || || | || ||||||||| ||||| Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23251535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262829390600