Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq626 179 5e-40 seq625 93.3 6e-14 >seq626 Length=20921866 Score = 179 bits (198), Expect = 5e-40 Identities = 468/705 (66%), Gaps = 14/705 (2%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||| ||||| |||||||| ||| | ||| | ||| || || || || ||||||| | Sbjct 6579878 TTCAAACTCTTCTCCCCA-GCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCG 6579820 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 |||| || ||| | | || || ||||| ||||| || || | ||| ||||| | | Sbjct 6579819 ACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGA 6579760 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACG 72118 | ||||| | | | ||||||| | | || || ||||| |||| ||| |||| Sbjct 6579759 ACAGATCACGAGCAC---GCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACT 6579703 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || || | ||| ||||| | | |||| || || ||||||| Sbjct 6579702 CGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTC 6579643 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 |||||||||| | || | ||| ||||| || || || | | ||| || || | |||| Sbjct 6579642 CTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCAT 6579583 Query 72239 TGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTGCTAA--TTG 72295 |||| | |||||||| |||| || | || ||| | || ||||| ||| | ||| Sbjct 6579582 TGGAAGTTCCATTGGTTCCGGCAATGACAG-ATCCTGTAGCGCGAATCTTGTGGACGTTG 6579524 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 || || ||||| || || | || ||||| | || || | || || ||||| |||| Sbjct 6579523 --AGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGA 6579466 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 | || || ||| || |||| | || || || || ||||| || | |||| Sbjct 6579465 TTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGAC 6579406 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 ||||| | || || | || || ||||| ||||| | || || |||| |||| Sbjct 6579405 ATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGAT 6579346 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||||||||| || || | || || | | | || || || | ||||||||||| | Sbjct 6579345 TGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCA 6579286 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| || || || | ||||||| | || || || |||| | || || || | Sbjct 6579285 ACATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAA 6579226 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 72640 ||| || || || || || |||| ||| |||| || || |||| Sbjct 6579225 GAGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAA 6579181 Score = 113 bits (124), Expect = 6e-20 Identities = 275/416 (66%), Gaps = 3/416 (1%) Strand=Plus/Plus Query 70828 TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 70887 |||||||| | |||||||| || || || || || ||||||||||||| ||||| Sbjct 6580818 TTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATT 6580877 Query 70888 CTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCG 70947 || | || ||||| || | ||| || || || || | || ||| ||||||| Sbjct 6580878 GATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCG 6580937 Query 70948 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATA 71007 ||||| || || | || |||||||| | |||||| ||||||| || ||||| | | Sbjct 6580938 ATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCACACA 6580997 Query 71008 GTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCA 71064 || || | | ||| ||||| ||||| | | | |||||||| |||||| Sbjct 6580998 GTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCATTG 6581057 Query 71065 TCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTA 71124 | ||||| | | ||| || ||||| || |||| ||| ||| || || | | Sbjct 6581058 TTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTCCTTC 6581117 Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 || | || ||||| || | || || || || || | || | |||| ||| || || Sbjct 6581118 AGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATGTTC 6581177 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 71240 || || || || | ||||| || ||||| | |||||||||||| || || || Sbjct 6581178 GATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| ||||| |||||||| ||||| || || |||||||| || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 |||||| ||||| || || | || || || | ||| | | |||| | || | ||| Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| |||| || || || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 |||||||||||| | || || |||||||||||||| | ||| |||||| | || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCTTTGATGAT 3165162 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 ||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 72929 ||| ||||| || || | || ||||||||| ||||| Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6572685 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 ||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 72929 ||| ||||| || || | || ||||||||| ||||| Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6585102 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 70828 TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 70887 |||||||| | |||||||| || || || || || ||||||||||||| ||||| Sbjct 6571277 TTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATT 6571336 Query 70888 CTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCG 70947 || | || ||||| || | ||| || || || || | || ||| ||||||| Sbjct 6571337 GATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCG 6571396 Query 70948 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATA 71007 ||||| || || | || |||||||| | |||||| ||| |||| || ||||| | | Sbjct 6571397 ATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCCTTCTGTGATATCTCCCACACA 6571456 Query 71008 GTTTTATAAACTCGCTTAATATCTTCTGG 71036 || || | | ||| ||||| ||||| Sbjct 6571457 GTGCGGTACAGTTCCTTGATATCATCTGG 6571485 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 ||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 72929 ||| ||||| || || | || ||||||||| ||||| Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23251535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133621155400