Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq626 118 2e-21 >seq626 Length=20921866 Score = 118 bits (130), Expect = 2e-21 Identities = 220/318 (69%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||||||| || ||||| | || ||||| |||||||| | || || Sbjct 3164719 CTTCTACGGATTCCAAATCGCCATCGAGAATATTCATTCGGAGATGTACTCGAAGCTCAT 3164778 Query 125294 TGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 ||| | ||| || || ||| || | ||| |||| || || ||||| ||| | Sbjct 3164779 TGAGACGTATATCCGTGATGAGACGGAGCGT---CACACTCTTTTCAACGCCATCTTCGA 3164835 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | || ||| || ||||| | |||| |||| ||||| ||| | || | Sbjct 3164836 ATTCGAGTTTATCAAGAAGAAGGCCGACTGGGCTCTTCGCTGGATTTCAGACAAGAAAGC 3164895 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTA 125469 |||| |||||| |||| | || ||||||||||| ||||| |||||||| ||| | Sbjct 3164896 GTCGTTCGCCGAACGACTCATCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGATC 3164955 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 | || || | ||||| |||||||||||||| ||||| ||||| || |||| || || Sbjct 3164956 G-TTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTTATGCCGGGTTTGACCCATTCTA 3165014 Query 125530 ACGAGTTTATATCTCGAG 125547 | ||| | |||||||| Sbjct 3165015 ATGAGCT--CATCTCGAG 3165030 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || ||||| ||| | ||| ||||| | || || |||||||| || Sbjct 6579636 CAGGGAGGAAACAAGCGCCCAGGAGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGAT 6579695 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || ||| | ||||| ||| | || ||||||| || || | || Sbjct 6579696 GTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGAGCGTGCTCGTGAT 6579755 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || ||||||||||| || | ||||||||||||||| | | | | | Sbjct 6579756 CTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGAGAAAGATCAGGAT 6579815 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || |||||||| | || || || || ||| |||||||| ||||||||| Sbjct 6579816 TGGTCGCTGATGTGCCCATGCGAGTGCCCAGGACTCGACGACTGCTGGGGAGAAGAGTTT 6579875 Query 97116 GAGGC 97120 || || Sbjct 6579876 GAAGC 6579880 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 || ||||| | || |||||||| || || || || | || || ||| ||||| || Sbjct 3165171 GACGCCGTCACCATTGAACAAGAATTCCTCACAGAGGCTCTTCCAGTCGATATGATCGGA 3165230 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 ||||| || || |||| | | ||||| |||||||| || |||| | | || | ||| Sbjct 3165231 ATGAATTGTCGTCTGATGTCCCAATACATTGAGTTTGTCGCCGATCATTTGCTCCAAGAG 3165290 Query 125766 TT--GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | ||| | | || | ||||| | |||||| || ||||| |||||| | ||| | Sbjct 3165291 CTCGGATGTGAC--AAACTGTACAAAGTCAAGAACCCATTTGACTTCATGGAGAACATTT 3165348 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 | | || || ||||||||||| |||||||| Sbjct 3165349 CGATCGACGGAAAGACCAACTTCTTCGAGAA 3165379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 124998 TTTCCCA-TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 ||||||| | || ||||||| |||||| | | || || |||||| ||||| ||||| Sbjct 3164438 TTTCCCACTGAGACATCATGATATTTGGCAGTTCTATAAGAAGGCTGTCGCCTCGTTTTG 3164497 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 ||| |||||||| || ||||| ||||| || |||||||||||| | | || | Sbjct 3164498 GACTGTCGAAGAAGTTGATCTTGGAAAGGATATGAACGATTGGGAGA--AGATGAACGGC 3164555 Query 125117 AACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGT 125176 | ||||| | ||||| || | || | ||||| || |||| || || ||||| || Sbjct 3164556 GA-TGAGCAGTACTTTATCTCTCGAGTTCTCGCCTTTTTCGCCGCTTCTGACGGAATTGT 3164614 Query 125177 CAACGACAATCTG 125189 ||| || ||| || Sbjct 3164615 CAATGAGAATTTG 3164627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053039945400