Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq542 149 6e-31 seq549 140 3e-28 seq625 109 5e-19 >seq542 Length=114868 Score = 149 bits (164), Expect = 6e-31 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTT-GCACGTTATAAT 94835 || ||||||||| | || | |||||||| | ||| |||||||||| | | ||| || | Sbjct 76906 CATTCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGT 76965 Query 94836 CGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 || || |||| |||||| ||||| |||||| | ||||| |||||||||||||||| Sbjct 76966 CGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTG 77025 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | || || ||||| ||||| | ||| || ||||||||| | | ||||| | | Sbjct 77026 GTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCT 77085 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 77086 CGACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 145 bits (160), Expect = 7e-30 Identities = 178/241 (74%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||| | || | |||||||| | ||| || ||||| || | | Sbjct 76442 AAAATTTGCATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATG 76501 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | || || | |||||| || || |||||| | ||||| ||||||| Sbjct 76502 TTGTAGTCCG--AGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTT 76559 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| || || ||||| ||||| | || || ||||||||| ||| ||||| Sbjct 76560 GCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGT 76619 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | ||||| |||| || ||||| ||||| || || ||||| || |||||||||| Sbjct 76620 CAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCA 76679 Query 95007 T 95007 | Sbjct 76680 T 76680 Score = 125 bits (138), Expect = 6e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||| || | |||||||| | ||| || ||||| || | ||| | Sbjct 75938 TTTGCATTCCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGT 75997 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||| | || || || |||||| || || |||||| | ||||| || | ||| || Sbjct 75998 AGTCGG--AAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTG 76055 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| || || || || ||||| | || || ||||||||| | | ||||| | Sbjct 76056 ATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGA 76115 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||| |||||||| | ||| || || ||||||||||| Sbjct 76116 AGCCTCGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 ||| ||| | || || | ||||||||||||||| || || || || ||||| | || || Sbjct 77268 TTTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTT 77327 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| ||| |||||||| | ||||| |||| || ||||| ||||| || Sbjct 77328 GGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGT 77387 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||||||||| Sbjct 77388 GAGTGTTTTGACGAAGATCTGCAT 77411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| |||||| | ||||| | ||| ||||| ||||| || || ||||| || Sbjct 77484 ATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTT 77543 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| ||| || |||| || || || | ||||| Sbjct 77544 GTCTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGAT 77603 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||||||||||| | ||||| || ||||| |||||| || Sbjct 77604 GGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGATT 77643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | ||||| | ||| ||||| ||||| || || || || ||| Sbjct 76754 TCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTG 76813 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | || |||| || || |||| |||||| Sbjct 76814 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATG 76873 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || || || ||||||||||| Sbjct 76874 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 76908 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | |||||| |||||||||||||| ||||| ||||| | || || ||||||| Sbjct 76317 CAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA 76376 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||||| | ||||| || | ||||| || ||||| || || || | Sbjct 76377 CGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGGTGAGGGTCT 76436 Query 94992 TCACAAAGATCTGCAT 95007 | | || || ||||| Sbjct 76437 TAATGAAAATTTGCAT 76452 >seq549 Length=112515 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | |||||||| | ||| ||||||||| | | ||| ||||| Sbjct 112121 CATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTGG-ATGTTGTAATC 112179 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || |||| |||||| ||||| |||||| | ||||| |||||||||||||||| Sbjct 112180 CGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGT 112239 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| | | || ||||| | ||| || ||||||||| | | ||||||| || Sbjct 112240 GGGATTCC--TCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTC 112297 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | |||||||| |||||||| | |||||| || ||||||||||| Sbjct 112298 GACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || ||| || |||| |||||| || || |||||| Sbjct 111927 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGTTGCTTTCCG 111986 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | |||||||| | |||||||||||| || || || |||||||| | || || |||||| Sbjct 111987 GCGAAGATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTG 112046 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||||| | || || |||| |||||||| |||||||| ||||| Sbjct 112047 ACGTTCTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTC 112106 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 112107 TTGACGAAGATCTGCAT 112123 >seq625 Length=33334924 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || |||||||| | ||| || ||| | ||| |||||| Sbjct 31079068 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 31079009 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | ||||| | ||||||||||||||| ||||| ||||| ||||| | Sbjct 31079008 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 31078949 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | | ||||| || | || || || || Sbjct 31078948 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 31078889 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || || ||||| |||||| Sbjct 31078888 CCCGTCAGAGTCTTGACGAAGATTTGCATG 31078859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287473579400