Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq625 192 9e-45 seq626 183 5e-42 seq289 178 2e-40 >seq625 Length=33334924 Score = 192 bits (212), Expect = 9e-45 Identities = 186/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | ||||| || ||||||||||||||||| |||||||| ||| Sbjct 26501478 GCCAAACGCCATCGCAAAGTCCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATC 26501537 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | ||||||||||| ||| |||||||| | |||| || |||| | Sbjct 26501538 CGTCGTCTCGCCAGAAGAGGTGGAGTCAAACGTATCTCTGGACTCATCTACGAGGAGACT 26501597 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || |||| |||| Sbjct 26501598 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTGATCCGTGATGCCGTCACCTATTGCGAG 26501657 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| | ||||| || |||||||| ||||| Sbjct 26501658 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTTGTCTACGCTTTGAAACGCCAAGG 26501716 Score = 187 bits (206), Expect = 4e-43 Identities = 188/241 (78%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || |||||||||||||||||||| |||||||| Sbjct 28924011 GCCAAGCGCCATCGCAAAGTCCTTCGTGACAACATCCAAGGAATCACCAAACCAGCTATT 28923952 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| | |||||| | |||| ||||||| | Sbjct 28923951 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATTTCTGGACTCATCTACGAAGAGACT 28923892 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | || |||||| | |||||| ||| ||| |||| ||||||| | |||| ||| || Sbjct 28923891 CGAGGAGTGTTGAAGGTATTCCTCGAGAACGTCATCCGTGATGCTGT-CACT-TACTGCG 28923834 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||| | ||||| || ||| ||||||| |||| || || ||||| || |||| Sbjct 28923833 AGCACGCCAAAAGAAAGACCGTTACCGCCATGGACGTCGTATACGCTTTGAAGCGCCAAG 28923774 Query 16671 G 16671 | Sbjct 28923773 G 28923773 Score = 168 bits (186), Expect = 1e-37 Identities = 184/241 (76%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| ||||||||||||||||||||||||||||| || Sbjct 26600705 GCCAAGCGCCATCGCAATGTTCTTCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 26600764 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || || ||||| ||||| |||||||| | |||| ||||| | | Sbjct 26600765 CGCCGTCTCGCCCGAAAAGGAGGAGTTAAGCGCATCTCTGGACTCATCTACGAAGAAACT 26600824 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| || ||| || | |||||| ||| ||| |||| ||| || | |||| ||| || Sbjct 26600825 CGTGGAGTCTTGGAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGT-CACT-TACTGCG 26600882 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||| | ||||| |||||| ||||| |||| || || ||||||| |||| Sbjct 26600883 AGCACGCCAAAAGAAAGACCGTCACCCTAATGGACGTCGTTTACGCTTTGAAACACCAAG 26600942 Query 16671 G 16671 | Sbjct 26600943 G 26600943 Score = 145 bits (160), Expect = 1e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 |||| || || || ||||| ||||||||||| || ||||||||| |||| || | ||| Sbjct 30108708 AGCCGGCCATTCGCCGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATCTCCGGTCTTATCT 30108649 Query 16542 ATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCC 16601 | ||||||| ||| | || |||||| | |||||| ||| ||| || | ||| || || Sbjct 30108648 ACGAAGAGACTCGAGGAGTCTTGAAGGTATTCCTCGAGAACGTCATTCGTGACGCAGTCA 30108589 Query 16602 ACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 ||| ||||||||| || | |||||||||||| | ||||| |||||||||| |||| Sbjct 30108588 CCTACTGCGAGCACGCAAAGAGAAAGACTGTCACCGCAATGGACGTCGTCTATGCTTTGA 30108529 Query 16662 AACGTCAAGG 16671 | |||||||| Sbjct 30108528 AGCGTCAAGG 30108519 >seq626 Length=20921866 Score = 183 bits (202), Expect = 5e-42 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| ||||||||||||||||||||||||||||| || Sbjct 16855455 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 16855514 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || ||||||||||| |||| ||| | |||| || || | | Sbjct 16855515 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGCATCTCAGGACTCATCTACGAGGAAACT 16855574 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||||| ||| ||| || | |||||| || ||| |||| Sbjct 16855575 CGTGGAGTCTTGAAGGTGTTCCTTGAGAACGTCATTCGTGATGCCGTCACCTACTGCGAG 16855634 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| |||||| ||||||| |||| || || |||||||| ||||| Sbjct 16855635 CACGCCAAAAGAAAGACCGTCACCGCCATGGACGTCGTTTACGCTTTGAAACGCCAAGG 16855693 Score = 183 bits (202), Expect = 5e-42 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| ||||||||||||||||||||||||||||| || Sbjct 16970734 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACCAAGCCAGCCATT 16970675 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || ||||||||||| |||| ||| | |||| || || | | Sbjct 16970674 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGCATCTCAGGACTCATCTACGAGGAAACT 16970615 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||||| ||| ||| || | |||||| || ||| |||| Sbjct 16970614 CGTGGAGTCTTGAAGGTGTTCCTTGAGAACGTCATTCGTGATGCCGTCACCTACTGCGAG 16970555 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| |||||| ||||||| |||| || || |||||||| ||||| Sbjct 16970554 CACGCCAAAAGAAAGACCGTCACCGCCATGGACGTCGTTTACGCTTTGAAACGCCAAGG 16970496 >seq289 Length=1049 Score = 178 bits (196), Expect = 2e-40 Identities = 185/240 (77%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || || ||||||||||||||||||||||||||||| || Sbjct 112 GCCAAGCGCCATCGCAAGGTC-CTACGTGATAACATCCAAGGAATCACCAAGCCAGCCAT 170 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| || | | || ||||||||||| |||| ||| | | || ||||| | Sbjct 171 TCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGCATCTCAGGACTCATTTACGAAGAAAC 230 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||||| | ||||| ||| ||| |||| ||| || || ||| ||| Sbjct 231 TCGTGGAGTCTTGAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACTGCGA 290 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||||| | ||||| |||||| ||||||| |||| || || |||||||| ||||| Sbjct 291 GCACGCTAAAAGAAAGACCGTCACCGCCATGGACGTCGTTTACGCTTTGAAACGCCAAGG 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074591985845