Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq626 165 1e-35 seq625 93.3 5e-14 >seq626 Length=20921866 Score = 165 bits (182), Expect = 1e-35 Identities = 474/723 (66%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| ||||| |||||||| | ||| | ||| || || || || ||||||| ||| Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || || | || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||||| | | | | ||||| | | || || ||||| |||| ||| |||| | Sbjct 6579758 CAGATCACGAGCAC---GCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTC 6579702 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | | ||| | ||||| || || | ||| ||||| | | |||| || || |||||||| Sbjct 6579701 GAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCC 6579642 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||||||||| | || | ||| ||||| || || || | | ||| || || | || || Sbjct 6579641 TCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATT 6579582 Query 63434 TGATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAA--TTGA 63490 || | |||||||| |||| || | || | || | || ||||| || | |||| Sbjct 6579581 GGAAGTTCCATTGGTTCCGGCAATGACAGAT-CCTGTAGCGCGAATCTTGTGGACGTTGA 6579523 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | || ||||| || || | || ||||| | || || | || || || || ||||| Sbjct 6579522 --GTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGAT 6579465 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || ||| ||| |||| | || || || || ||||| || | |||| Sbjct 6579464 TCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACA 6579405 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||||| | || || | || || ||||| ||||| | || || || | ||||| Sbjct 6579404 TGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATT 6579345 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||||||||| || || | | || | | | ||||| || | ||||||||||| || Sbjct 6579344 GTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAA 6579285 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||| || || || | ||||||| | ||||| || |||| | || || || | Sbjct 6579284 CATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAG 6579225 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| || || || || || |||| ||| |||| || || |||| || | ||||| || Sbjct 6579224 AGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAG 6579165 Query 63851 TTT 63853 || Sbjct 6579164 CTT 6579162 Score = 136 bits (150), Expect = 5e-27 Identities = 282/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 62019 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62078 || |||||||| | ||||||||||| || || || || ||||||||||||| ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 62079 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62138 || || | || || ||||| | || |||||||| || | |||||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 62139 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 62198 |||||||| || || | || |||||||| | |||||| ||||||| || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCAC 6580994 Query 62199 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCA 62255 | ||| || | | ||| ||||| ||||| | | | |||||||| |||||| Sbjct 6580995 ACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Query 62256 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 62315 | || || | | |||||| |||||||| |||| ||| ||| || || | Sbjct 6581055 TTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTCC 6581114 Query 62316 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62375 | || | || ||||| || | || || || || || | || | |||| ||| || Sbjct 6581115 TTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATG 6581174 Query 62376 TTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 62434 || || || || || | |||||| || ||||| | |||||||||||| || || || Sbjct 6581175 TTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Score = 109 bits (120), Expect = 7e-19 Identities = 210/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 61984 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 ||||||| | |||||||||| | | | || || |||||||| | |||||||||| Sbjct 6571239 CCTTGTCGACGGTGAATTGAACAGCATTGACGGCTGGCTTCGTACGCAAGTAGTACATTC 6571298 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || || || ||||||||||||| ||||| || | || || |||| Sbjct 6571299 CAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCGGCGTAGCTCG 6571358 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 | | || |||||||| || | |||||| |||||||||||| || || | || |||| Sbjct 6571359 GCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCACGATCAGCAG 6571418 Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62223 |||| | |||||| ||| |||| || ||||| | ||| || | | ||| |||| Sbjct 6571419 CCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAGTGCGGTACAGTTCCTTGATAT 6571478 Query 62224 CTTCTGGAA---GGTTTGTATTCTGAATGGA-TCCACCATCTGCCATAATCCTATTCTTG 62279 | ||||| | | | |||||||| || |||| | || || | | |||||| Sbjct 6571479 CATCTGGGATTCCGGCGATGTTCTGAATTGATTCCATTGTTGGCAATCAATCGATTCTTC 6571538 Query 62280 ATCTCATC 62287 |||||||| Sbjct 6571539 ATCTCATC 6571546 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| ||||| |||||||| ||||| || || || ||||| || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||||| ||||| || || | || || || | ||| | | |||| | || | ||| Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| ||||| || || || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 |||||||||||| | || || |||||||||||||||| || || ||| | || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCTTTGATGAT 3165162 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGC 64123 ||| ||||| || || | || |||||||| ||||| Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6572685 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGC 64123 ||| ||||| || || | || |||||||| ||||| Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6585102 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGC 64123 ||| ||||| || || | || |||||||| ||||| Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23251535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| || || | |||||| | || || ||||| ||||| || || |||| ||||| || Sbjct 23252763 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23252704 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 ||||||||| || || | ||| ||| | || ||||||| |||||| || || || Sbjct 23252703 CGGATGTTGGGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGCTCCACAGT 23252644 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGC 64123 ||| ||||| || || | || |||||||| ||||| Sbjct 23252643 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23252605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942021751400