Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq549 89.7 5e-13 >seq549 Length=112515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | |||||||| | |||||| | || | ||| | Sbjct 112124 AATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTC 112065 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| |||||||| || || || || ||||| Sbjct 112064 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCA 112005 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | | || | || ||| || |||||||| |||| | | | | |||||| || Sbjct 112004 GCAACGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACAA 111945 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||| ||||| || || || ||||||| || || | || | |||||| Sbjct 111944 CATCCAAAAGGAGTCAACCCTCCATCTCGTTCTTCGTCTCCGTGGAGGA 111896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658421118800