Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq626 199 1e-45 seq623 86.0 2e-11 >seq626 Length=20921866 Score = 199 bits (220), Expect = 1e-45 Identities = 431/637 (68%), Gaps = 12/637 (2%) Strand=Plus/Plus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 ||||| || || || || ||||| |||||||| || || ||||| || | | | || Sbjct 6579264 GTTGAGCGGCCACAACAGATGTTGATGCGTGTCGCCATCGGTATTCACGGAGAGAACATT 6579323 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCA 363564 | || || || || || || || || | | || | ||||| || | ||| Sbjct 6579324 CAAGCTGCCATCGAGACGTACAATCTGATGTCGGAGCGATACATGACGCATGCTTCCCCA 6579383 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 || | | ||| ||||||| || ||||||||||| || ||||| || || | |||| Sbjct 6579384 ACTCTCTTCAACTCTGGAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAATG 6579443 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 | || ||||| || || |||| || || | ||| | |||||||| || || ||| Sbjct 6579444 AGCGAGGATTCGATTCTCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAAG 6579503 Query 363685 AATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATT 363741 | ||| || |||||||| | | || ||||||| |||| || |||| | | || |||| Sbjct 6579504 AGTGCCGGAGGAATTGGACTCAACG-TCCACAAGATTCGCGCTACAGGATCTGT--CATT 6579560 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 ||| || ||| || |||||||| | || ||||||||||| | |||| || Sbjct 6579561 GCCGGAACCAATGGAACTTCCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACA 6579620 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || | || || || ||||| ||| |||||| ||| || || || || || || ||| Sbjct 6579621 GCTCGTTATGTTGATCAGGGAGGAAACAAGCGCCCAGGAGCTTTCGCCATCTACCTTGAG 6579680 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG---AAAAGAG 363918 || || |||||| | || ||||| | | || || || ||||| || | ||||| Sbjct 6579681 CCATGGCACGCCGATGTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAG 6579740 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 || |||||| |||||||||||| || || ||||| | |||| || ||||||||| Sbjct 6579741 GA---GCGTGCTCGTGATCTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGC 6579797 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || ||| || | || ||||||| || | |||||| ||| || ||||| || ||| Sbjct 6579798 GTCGAGAAAGATCAGGATTGGTCGCTGATGTGCCCATGCGAGTGCCCAGGACTCGACGAC 6579857 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 ||||| || || | || ||||| || | ||||| Sbjct 6579858 TGCTGGGGAGAAGAGTTTGAAGCTCTTTATGCAAAGT 6579894 >seq623 Length=908941 Score = 86.0 bits (94), Expect = 2e-11 Identities = 243/370 (66%), Gaps = 19/370 (5%) Strand=Plus/Minus Query 12826 GATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTT 12885 ||||| || || || | |||||| |||||||| || || | | ||||||| |||||| Sbjct 472095 GATCCGAACGTAAGTGCATCCATATCTTCAGTAGCAGTTCCGAATACTTTTCCAGTTTTT 472036 Query 12886 AC-ATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCAT 12944 || | ||| |||||| |||||| || ||||||||||||| ||| | ||||| ||||| Sbjct 472035 ACGAGTTGC-GCACATTGAGCTTCAGCTTCACATGGTGCTTCAACAATAGGAATTCCCAT 471977 Query 12945 TAGGGTTAGCATCTTTTTTACTTCTTCGCTATG----TTCGCGAGTTGCGCGAACGCTTC 13000 | | || | || ||||||||| | || || | | || | | || |||| Sbjct 471976 CAATCCCAACAATTGCTTCACTTCTTCGTTCTGCTGTTTTGTTACTTTCAC-AAGTCTTC 471918 Query 13001 TCTTTTCTTGTTTTTCGACTTCAGTTGCATCGTCGGTTAATTTTAGTTCGGATAGTGCTT 13060 || || ||| || | || | ||||| | || ||| ||| | | ||||| Sbjct 471917 TC---TCGAATTTCTCAGCCTCTTTCGCATCACCCTTTTCTTTCGCTTCAGTCAATGCTT 471861 Query 13061 GT---------GCCTGTCGTTCATTTCGTTTATCAAGCTCTTTCTTTTTCAAAACAGGTG 13111 | || | ||||| || ||| || || ||| |||||| | | || | Sbjct 471860 TTTCAGCTTCAGCTCGGCGTTCTGATCTTTTCTCTAGTTCTCCACTTTTCATATCTGGAG 471801 Query 13112 GCTTTCCGTCAAAAACATAGACGGGTTTAATTCCTGCTTCAATTAATCGAATGGTTCGGT 13171 | ||||| || ||||| || || ||||| ||||| ||||| | ||||| || |||| Sbjct 471800 GTTTTCCATCGAAAACGTAAACTGGTTTGATTCCATTGTCAATCATACGAATCGTACGGT 471741 Query 13172 AAAAAATACC 13181 |||| || || Sbjct 471740 AAAACATGCC 471731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342495020030