Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq549 125 7e-24 seq625 123 2e-23 seq542 113 4e-20 >seq549 Length=112515 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| ||||||||||| |||||||| ||| | Sbjct 111897 CCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 111956 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || ||||| || ||| |||||||||| ||||| || || ||| Sbjct 111957 AAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGG 112016 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || ||||| | ||| | || || | || || | Sbjct 112017 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACC 112076 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || ||||| |||||||| Sbjct 112077 TCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 112123 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || || |||||| || |||||||||| || ||||| Sbjct 112136 ACGGAGAACCAAGTGGAGAGTGGATTCCTTTGGA-TGTTGTAATCCGACAAAGTGCGACC 112194 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| |||||||| || ||| |||| || | ||||| | | | |||||||| || || Sbjct 112195 ATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGAT-CTGTGGGATTCC-TCCTT 112252 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| || || ||||| | ||| | || || | | ||||| || | ||| | Sbjct 112253 GTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAAGGTGAT 112312 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || | |||||| ||||| |||||||| Sbjct 112313 GGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 >seq625 Length=33334924 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | |||||||||||||| |||||||| ||| Sbjct 31079086 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 31079027 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || ||| |||| | | ||||| || || || Sbjct 31079026 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 31078967 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | ||| | ||||||| || ||||| Sbjct 31078966 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 31078907 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| ||||| || ||||| || ||||| || ||||| || ||||||||| Sbjct 31078906 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 31078856 >seq542 Length=114868 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || || || | ||||||||||| || |||||||| ||| Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || ||||| || ||| |||| ||||| || || || || ||| Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | || |||| | ||||| Sbjct 76066 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACT 76125 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||| || ||||| |||||||| Sbjct 76126 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | ||||||||||| || |||||||| || | ||| || Sbjct 76465 ACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCC 76524 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| || ||||| || ||| |||| || | ||||| || || ||||||||||| || Sbjct 76525 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTT 76584 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | ||| | ||| || | || |||| || | |||| Sbjct 76585 GTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAAT 76644 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || ||||| ||||| |||||||| Sbjct 76645 GGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCAT 76680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTT-GAATGTTGTAATCGCTCATGGTGCGCG 131077 ||| || || || || | || || ||||||| | |||||||| ||| || ||||| Sbjct 76921 ACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGAC 76980 Query 131078 AGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTT 131137 ||||| |||||||| || ||| |||| || | ||||| || || ||||||||||| | Sbjct 76981 CATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCT 77040 Query 131138 TGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 |||| || || ||||| | ||| | || |||| | ||||| || | || | Sbjct 77041 TGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGA 77100 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || ||||| || || |||||||| Sbjct 77101 TCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || | ||| | || |||||||| || || ||||| || Sbjct 77413 CCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 77472 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || |||||||| || ||| |||| | | ||||||||| || ||| Sbjct 77473 AGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 77532 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | ||||| | | ||| | Sbjct 77533 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACC 77592 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | |||||| || || | ||||| ||||| || ||||||| Sbjct 77593 TCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGA 77641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008876393600