Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq180 118 7e-22 seq626 104 2e-17 seq230 98.7 7e-16 seq214 98.7 7e-16 seq542 95.1 8e-15 seq201 95.1 8e-15 >seq180 Length=1182 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 566 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGT 507 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| ||||| ||||||| Sbjct 506 TAATCCATTCATGCGCGTCAACAATTAAATGACGA 472 >seq626 Length=20921866 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||| ||||| ||| |||||| | |||||||||||||||||||| ||| Sbjct 6212432 CTCAACGTGAATCGCGCTGTCGCGGACCCCTTCTACCGCTACAAAATGCCAAAGCTCTCG 6212373 Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290 ||||| ||||| || || |||||||| || ||||| |||||| |||||| |||| || Sbjct 6212372 GCCAAAGTCGAAGGAAAAGGAAACGGAATCAAAACGGTCATTTCGAACATGTCTGAGATC 6212313 Query 6291 GCTAAGGCGCTCGGACGCCC 6310 || || || |||| ||||| Sbjct 6212312 GCAAAAGCTCTCGAGCGCCC 6212293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| | Sbjct 6159649 CTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGAGT 6159708 Query 20009 TAATATTTAGCCTTA 20023 ||| ||||||||| Sbjct 6159709 CGATACTTAGCCTTA 6159723 >seq230 Length=1024 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 377 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 436 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 437 GTCGATATTTAGCCTTA 453 >seq214 Length=1368 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 777 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 836 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 837 GTCGATATTTAGCCTTA 853 >seq542 Length=114868 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||||||| | ||||| |||||||| |||||| || || ||||| | Sbjct 75942 CATT-CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGT 76000 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| | || || | ||| |||||||| || || | ||||||||||| | Sbjct 76001 CGGAAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTG 76060 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || || ||||| || || ||| || |||| | || || | | Sbjct 76061 GTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCT 76120 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || || || || ||||| || || ||||| |||||||| Sbjct 76121 CGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 >seq201 Length=1067 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 351 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 410 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||| ||||||| Sbjct 411 GTCGATATTCAGCCTTA 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944485357615