Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq626 174 2e-38 seq625 93.3 5e-14 >seq626 Length=20921866 Score = 174 bits (192), Expect = 2e-38 Identities = 476/723 (66%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| ||||| |||||||| | ||| ||||| || || || || ||||||| ||| Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || || | || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGC 63168 ||||| | | | | ||||| | | || || ||||| |||| ||| |||| | Sbjct 6579758 CAGATCACGAGCAC---GCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTC 6579702 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | | ||| | ||||| || || | ||| ||||| | | |||| || || |||||||| Sbjct 6579701 GAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCC 6579642 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 ||||||||| | || | ||| ||||| || || || | | ||| || || | ||||| Sbjct 6579641 TCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATT 6579582 Query 63289 GGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACTAA--TTGA 63345 ||| || |||||||| || | || | || ||| | || ||||| || | ||| Sbjct 6579581 GGAAGTTCCATTGGTTCCGGCAATGACAG-ATCCTGTAGCGCGAATCTTGTGGACGTTG- 6579524 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || || ||||| || || | || ||||| | || || | || || ||||| ||||| Sbjct 6579523 -AGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGAT 6579465 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 || || ||| || |||| | || || || || ||||| || | |||| Sbjct 6579464 TCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACA 6579405 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||||| | || || | || || ||||| || || | || || || | ||||| Sbjct 6579404 TGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATT 6579345 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||||||||| || || | | || | | | ||||| || | ||||||||||| || Sbjct 6579344 GTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAA 6579285 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || || || | ||||||| | ||||| || |||| | || || || | Sbjct 6579284 CATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAG 6579225 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || || || || || |||| ||| |||| || || |||| || | ||||| || Sbjct 6579224 AGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAG 6579165 Query 63706 TTT 63708 || Sbjct 6579164 CTT 6579162 Score = 127 bits (140), Expect = 3e-24 Identities = 280/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 61874 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 61933 || |||||||| | ||||||||||| || || || || ||||||||||||| ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 61934 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 61993 || || | || || ||||| | || |||||||| || | |||||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 61994 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAA 62053 |||||||| || || | || |||||||| | || ||| ||||||| || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCAC 6580994 Query 62054 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCA 62110 | ||| || | | ||| ||||| ||||| | | | |||||||| |||||| Sbjct 6580995 ACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Query 62111 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 62170 | || || | | |||||| |||||||| |||| ||| ||| || || | Sbjct 6581055 TTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTCC 6581114 Query 62171 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62230 | || | || ||||| || | || || || || || | || | |||| ||| || Sbjct 6581115 TTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGATG 6581174 Query 62231 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 62289 || || || || || | ||||| || ||||| | |||||||||||| || || || Sbjct 6581175 TTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 ||| ||||| |||||||| ||||| || || || || || || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 32432 CATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491 |||||| || ||||| || | || || || | ||| | | |||| | || | ||| Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 ||| |||||||| || || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 |||||||||||| | || || |||||||||||||| | ||| |||||| | || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCTTTGATGAT 3165162 Score = 104 bits (114), Expect = 3e-17 Identities = 209/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 61839 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 ||||||| | |||||||||| | | | || || |||||||| | |||||||||| Sbjct 6571239 CCTTGTCGACGGTGAATTGAACAGCATTGACGGCTGGCTTCGTACGCAAGTAGTACATTC 6571298 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || || || || ||||||||||||| ||||| || | || || |||| Sbjct 6571299 CAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCGGCGTAGCTCG 6571358 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | | || |||||||| || | |||||| |||||||||||| || || | || |||| Sbjct 6571359 GCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCACGATCAGCAG 6571418 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62078 |||| | || ||| ||| |||| || ||||| | ||| || | | ||| |||| Sbjct 6571419 CCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAGTGCGGTACAGTTCCTTGATAT 6571478 Query 62079 CTTCTGGAA---GGTTTGTATTCTGAATGGA-TCCACCATCTGCCATAATCCTATTCTTG 62134 | ||||| | | | |||||||| || |||| | || || | | |||||| Sbjct 6571479 CATCTGGGATTCCGGCGATGTTCTGAATTGATTCCATTGTTGGCAATCAATCGATTCTTC 6571538 Query 62135 ATCTCATC 62142 |||||||| Sbjct 6571539 ATCTCATC 6571546 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 63940 TGTTACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 ||| || || || || | || ||||||||| ||||| Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6572685 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 63940 TGTTACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 ||| || || || || | || ||||||||| ||||| Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 6585102 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 |||||||||||| || | ||| ||| | || ||||||| |||||| ||| || || Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 63940 TGTTACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 ||| || || || || | || ||||||||| ||||| Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23251535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || || | ||||| | || || ||||| |||||||| || |||| ||||| || Sbjct 23252763 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23252704 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 ||||||||| || || | ||| ||| | || ||||||| |||||| || || || Sbjct 23252703 CGGATGTTGGGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGCTCCACAGT 23252644 Query 63940 TGTTACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 ||| || || || || | || ||||||||| ||||| Sbjct 23252643 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGC 23252605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626732934000