Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq542 98.7 9e-16 >seq542 Length=114868 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | ||||| ||| | || Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || || ||||| || ||| Sbjct 76112 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 76053 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || ||| | || |||| ||| || | ||| ||||| Sbjct 76052 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAAC 75993 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || || || || | | |||||||||| Sbjct 75992 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGGAA 75944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324488011975