Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq626 95.1 1e-14 >seq626 Length=20921866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | ||| |||||||| || || || || || || ||||| || | | | || Sbjct 3164630 TACCAAATTCTCATTGACAATTCCGTCAGAAGCGGCGAAAAAGGCGAGAACTCGAGAGAT 3164571 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGAC 93594 ||| | | |||||| | || | ||| ||||||||| | ||| ||| |||||| || Sbjct 3164570 AAAGTACTGCTCATCGCCGTTCATCTTCTCCCAATCGTTCATATCCTTTCCAAGATCAAC 3164511 Query 93595 TTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATA 93654 ||||||||||||||||||||| || | || || || || | | ||| || || |||| Sbjct 3164510 TTCTTCGACAGTCCAAAACGAGGCGACAGCCTTCTTATAGAACTGCCAAATATCATGATG 3164451 Query 93655 TTGAATTGGAAATATGACAAAACGATT 93681 | | ||| || || ||||| ||||| Sbjct 3164450 TCTCAGTGGGAAAATCACAAATCGATT 3164424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856171094600