Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq625 127 2e-24 seq542 116 3e-21 seq549 89.7 4e-13 >seq625 Length=33334924 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || | || || ||||| || || || Sbjct 31078860 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 31078919 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 31078920 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 31078979 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || | |||||| || || ||||||| |||||| Sbjct 31078980 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 31079039 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || ||||| || || || | || || ||| | || | || |||||||| Sbjct 31079040 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGTGGAGGTTT 31079089 >seq542 Length=114868 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | ||||| || ||| |||| | ||||| || | || Sbjct 77137 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTCC 77078 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || |||||||||||||| || || ||||| ||||| Sbjct 77077 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 77018 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || ||| | |||||| ||||| | ||||| |||||| Sbjct 77017 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACAAC 76958 Query 22399 ATTCAAAAA-GAATCCACCATACATTTAGTT 22428 || |||||| |||||||| | || || ||| Sbjct 76957 ATCCAAAAAGGAATCCACTCTTCACTTGGTT 76927 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || || |||| | ||||| || | || Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || ||||| |||||| Sbjct 76112 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 76053 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || || | |||||| || ||| | ||||| |||||| Sbjct 76052 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAAC 75993 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || ||| | || ||| | ||||| Sbjct 75992 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGG 75946 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || ||||| |||| || || ||||| | | Sbjct 77639 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCT 77580 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| || || ||||| || || Sbjct 77579 GATACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 77520 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || ||| | || ||| | || |||| || ||||| Sbjct 77519 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAAT 77460 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | ||| | || | |||||||| Sbjct 77459 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTTCGTCTCCGCGGAGG 77413 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| || ||| | | Sbjct 76908 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTTGAAGCTTCT 76849 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || |||||||||||||| || ||||| || || Sbjct 76848 GATACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 76789 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || ||||| || ||| | ||||| | || |||| || ||||| Sbjct 76788 CAGAGACTTATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTCTCTGACTACAAT 76729 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | ||| | || | |||||||| Sbjct 76728 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTTCGTCTCCGCGGAGG 76682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||| || | ||||| || || ||||||| || || ||| || | Sbjct 76452 ATGCAAATTTTCATTAAGACCCTCACCGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 76393 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || ||||| || |||||| Sbjct 76392 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAA 76333 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||| | ||||| ||||| || || Sbjct 76332 CAAAGACTTATCTTTGCTGGTAA 76310 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || | |||||||| || ||| || | Sbjct 76680 ATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCT 76621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||||||||| || || ||||| ||||| Sbjct 76620 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 76561 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || | |||||| || ||| |||| || |||||| Sbjct 76560 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACAAC 76501 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | || || ||| Sbjct 76500 ATCCAGAAGGAGTCGACTCTTCACTTGGTT 76471 >seq549 Length=112515 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||||| || || || || |||| | ||||| || | | Sbjct 112348 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 112289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || |||||||||||||||| || |||| ||||| Sbjct 112288 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGA-ATCCCACA-GATCAG 112231 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || ||| | |||||| ||||| | || ||||||||| Sbjct 112230 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAAC 112171 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 | || ||| |||||||| | || || ||| Sbjct 112170 A-TCCAAAGGAATCCACTCTCCACTTGGTT 112142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724598235725