Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq626 100 6e-16 seq625 100 6e-16 seq480 100 6e-16 seq431 100 6e-16 seq473 98.7 2e-15 >seq626 Length=20921866 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 904333 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 904392 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 904393 CCCGCATTGGGCTGATGT 904410 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 919455 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 919396 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 919395 CCCGCATTGGGCTGATGT 919378 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 11496722 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11496781 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 11496782 CCCGCATTGGGCTGATGT 11496799 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 11498616 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11498675 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 11498676 CCCGCATTGGGCTGATGT 11498693 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 19969787 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 19969728 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 19969727 CCCGCATTGGGCTGATGT 19969710 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 19997423 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 19997364 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 19997363 CCCGCATTGGGCTGATGT 19997346 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 835979 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 836038 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 836039 CCCGCATTGGGC 836050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 850490 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 850549 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 850550 CCCGCATTGGGC 850561 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9799016 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9799075 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 9799076 CCCGCATTGGGC 9799087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 190/279 (68%), Gaps = 13/279 (5%) Strand=Plus/Minus Query 251483 TTTAAAAGTCACCGTCCATGTCAAACACATTATC-CTCAG----CATT--CATCACACCT 251535 |||| |||||| | |||| ||| ||| | || ||||| | || ||| || ||| Sbjct 3165459 TTTAGAAGTCAGCTTCCAAGTCGAAC----TGTCTCTCAGTCTCCGTTGACATTACTCCT 3165404 Query 251536 GGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATT 251595 |||||||||||||| || ||||| |||||||| || | ||| || || | || || Sbjct 3165403 GGACGTTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATG 3165344 Query 251596 AGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACG 251655 |||||||||||| || ||||| || | |||||| | ||| | || || || | Sbjct 3165343 TTCTCCATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGG 3165284 Query 251656 AAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATC 251715 | | | || || |||||||| | || || |||||| | | ||||| || ||| Sbjct 3165283 AGCAAATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATC 3165224 Query 251716 ATA-CGACAAGGAATTGCCTCACAGATGAATTCCTTTTC 251753 ||| |||| |||| ||||| || |||||| | ||| Sbjct 3165223 ATATCGAC-TGGAAGAGCCTCTGTGAGGAATTCTTGTTC 3165186 >seq625 Length=33334924 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 11833016 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11833075 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 11833076 CCCGCATTGGGCTGATGT 11833093 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 15762163 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 15762104 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 15762103 CCCGCATTGGGCTGATGT 15762086 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 15764317 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 15764376 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 15764377 CCCGCATTGGGCTGATGT 15764394 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 15780590 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 15780649 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 15780650 CCCGCATTGGGCTGATGT 15780667 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 20898395 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 20898454 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 20898455 CCCGCATTGGGCTGATGT 20898472 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 28340155 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 28340096 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 28340095 CCCGCATTGGGCTGATGT 28340078 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 5129606 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5129547 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 5129546 CCCGCATTGGGC 5129535 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9983909 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9983850 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 9983849 CCCGCATTGGGC 9983838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9984432 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9984373 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 9984372 CCCGCATTGGGC 9984361 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 15792378 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 15792319 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 15792318 CCCGCATTGGGC 15792307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 24942517 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 24942458 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 24942457 CCCGCATTGGGC 24942446 >seq480 Length=77369 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 58884 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 58943 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 58944 CCCGCATTGGGCTGATGT 58961 >seq431 Length=1192 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 794 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 853 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 854 CCCGCATTGGGCTGATGT 871 >seq473 Length=61594 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9345 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9286 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 9285 CCCGCATTGGGC 9274 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 18870 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 18811 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 18810 CCCGCATTGGGC 18799 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 21857 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 21798 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 21797 CCCGCATTGGGC 21786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027828042509265