Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq626 114 2e-20 >seq626 Length=20921866 Score = 114 bits (126), Expect = 2e-20 Identities = 196/281 (70%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| || | ||||||||| ||||| || ||||| ||||| | || || ||| ||||| Sbjct 3164708 GAGGCCCGTTTCTTCTACGGATTCCAAATCGCCATCGAGAATATTCATTCGGAGATGTAC 3164767 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | || || | | ||||| |||| ||| |||||| || || ||||| ||| Sbjct 3164768 TCGAAGCTCATTGAGACGTATATCCGTGATGAGACGGAGCGTCACACTCTTTTCAACGCC 3164827 Query 42621 AT----GGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA 42676 || | | ||| | |||||||||||||| |||||||| || |||||| Sbjct 3164828 ATCTTCGAATTCGAG----TTTATCAAGAAGAAGGCCGACTGGGCTCTTCGCTGGATTTC 3164883 Query 42677 GAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCT 42735 || | || || |||||| ||| | || | || || ||||||||||||| |||| Sbjct 3164884 -AGACAAGAAAGCGTCGTTCGCCGAACGACTCATCGCTTTCGCCGCCGTCGAGGGTATCT 3164942 Query 42736 TCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||| || | |||||||| ||||||||||||||| || Sbjct 3164943 TCTTCAGCGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAG 3164983 Score = 107 bits (118), Expect = 4e-18 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCC-GGGCA 244974 || || || || ||||| |||||| ||||| || || |||||| ||| ||||| Sbjct 6579886 TAAAGAGCTTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACT-CGCATGGGCA 6579828 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 ||| || ||| || | | || ||| | || |||||||||||| || | |||||| Sbjct 6579827 CATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAG 6579768 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 ||| |||| || || | | | || ||| || | || |||||||| | || | | Sbjct 6579767 AGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGAC 6579708 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 || || ||||| ||| ||||||| ||||| | ||||| |||| || || || ||||| Sbjct 6579707 GAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTT 6579648 Query 245155 GTTGCCTCCCTGGTCCAC 245172 ||| |||||||| || || Sbjct 6579647 GTTTCCTCCCTGATCAAC 6579630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331350180400