Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq243 152 2e-32 >seq243 Length=1117 Score = 152 bits (168), Expect = 2e-32 Identities = 252/359 (70%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 ||||| || ||| | ||||||| ||||| |||||||| ||| ||||| || | ||| Sbjct 573 ATGGCCGGCGAGCCGCTGATCACCGTCGTCGGGAACCTGGTTGCCGACCCCGAACCGCGC 514 Query 11066 TACACGCAGAACGGGCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTTC 11125 || ||| ||| | | || || ||| ||||| |||||||||||| | Sbjct 513 GTCAGCCAGGCCGGTAAGTCCTGGGTGACGTTCCGGATCGCCTCGACGCCGCGCGTGCGC 454 Query 11126 GACCGTCAGGCGAACGAGTGGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGTG 11184 ||||||||| || ||| ||| ||||||||| |||||||||||| | ||| || | Sbjct 453 GACCGTCAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGC-CGCGCCTT 395 Query 11185 GCGCGAGTTCGCGGAGCACGTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCATC 11244 |||||| |||||| || | || | ||||| |||||||||| ||| || |||| || Sbjct 394 CGGCGAGTACGCGGACAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCG--TC 337 Query 11245 C--GGACGCCTGAAGCAGCGCTCCTACCAGGACCGCGAGGGCAACAACCGCACCGCGATC 11302 | || || || | |||||| |||| ||| | |||| | | |||||| || || Sbjct 336 CAGGGCCGTCTCACCCAGCGCAGCTACACCGACAACCAGGGGCAGCAGCGCACCTCGCTC 277 Query 11303 GAGCTCGAGGTGGACGAGATCGGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCACCCG 11361 || |||||||| || ||| ||||||| | ||||||| || || | ||||| ||||| Sbjct 276 GACCTCGAGGTCGAAGAGGTCGGCCCCACGCTCCGCTGGGCCTCGACCCAGGTGACCCG 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148245229316710