Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq549 140 8e-28 seq542 138 3e-27 seq625 132 1e-25 seq626 118 3e-21 >seq549 Length=112515 Score = 140 bits (154), Expect = 8e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || ||||| | ||| |||||||| | || || |||||||| || ||||| Sbjct 111893 ATCTCCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTC 111952 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || | ||||| || || || | ||| ||||| |||||||| | ||| || ||| Sbjct 111953 GGACAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGG 112012 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||| ||||| || ||||| || || || ||||| || || | || | ||| Sbjct 112013 TGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTC 112072 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 112073 AACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 >seq542 Length=114868 Score = 138 bits (152), Expect = 3e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| |||||||| | ||| |||||||| | ||| || || |||||||| ||||| | Sbjct 76681 TCCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGA 76740 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||| || | || ||||| |||||||| || | ||| || ||| Sbjct 76741 GAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGG 76800 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || || || ||||| || || || ||||| || || | ||| | ||| || Sbjct 76801 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAAC 76860 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || || || ||||||||||| ||||||||| Sbjct 76861 CTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || || || || || | ||| ||||| |||||| Sbjct 75982 TCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAG 76041 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| ||||||||| || || || ||||| || || || ||||| Sbjct 76042 ATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 76101 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || ||||| | ||||| ||||| || |||| |||||||||| Sbjct 76102 TCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACG 76161 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 76162 AAGATCTGCAT 76172 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| |||||||| | ||| |||||||| | ||| || || |||||||| ||||| | Sbjct 77412 TCCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGA 77471 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | ||| ||||| | || ||||| |||||||| || | ||| || ||| Sbjct 77472 GAGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGG 77531 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || ||||| || || || || ||||| || | ||| | || || Sbjct 77532 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCAC 77591 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| || || || |||| || |||||||| || ||||| || Sbjct 77592 CTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGAT 77642 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 288281 TTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGA 288340 || |||||||||| || ||||||| | ||||| || || || | || ||||| |||| Sbjct 76945 TTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGA 77004 Query 288341 AGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 |||||| | || ||| |||||||||||| || || || || || || || |||| Sbjct 77005 AGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGT 77064 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | ||| | || ||||| | ||||||||||| |||||||| || |||| Sbjct 77065 TCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGA 77124 Query 288461 CGAATATCTGCATT 288474 | || ||||||||| Sbjct 77125 CAAAGATCTGCATT 77138 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || ||||| || || | ||| ||||| |||||| Sbjct 76490 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 76549 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || ||| |||||||||||| || || ||||| || || || ||||| Sbjct 76550 ATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTC 76609 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| || || || || || ||||| || || || || |||||| Sbjct 76610 TCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACG 76669 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 76670 AAGATCTGCATT 76681 >seq625 Length=33334924 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| ||| || ||||| || || | ||| ||||| |||||| Sbjct 31079050 TCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 31078991 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| ||| |||||||| || || ||||| || || || || || Sbjct 31078990 ATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTC 31078931 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || |||||||| || || ||||| || ||||||||||||||| Sbjct 31078930 TCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACG 31078871 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 31078870 AAGATTTGCAT 31078860 >seq626 Length=20921866 Score = 118 bits (130), Expect = 3e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 269148 TATGATCGGTATGAAT-GCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTA 269206 ||||||||| |||||| | || ||| ||| ||||| || || || || || |||| | Sbjct 3165221 TATGATCGGAATGAATTGTCG-TCTGATGTCCCAATACATTGAGTTTGTCGCCGATCATT 3165279 Query 269207 TCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGG 269266 | || | ||||| | ||| ||| ||||||| ||||| || || | ||| |||| Sbjct 3165280 TGCTCCAAGAGCTCGGATGTGACAAACTGTACAAAGTCAAGAACCCATTTGACTTCATGG 3165339 Query 269267 AACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAAC 269326 | |||||| |||| |||||||| ||||||||||| || |||||| ||| ||||||| Sbjct 3165340 AGAACATTTCGATCGACGGAAAGACCAACTTCTTCGAGAAACGTGTCTCCGAATATCAAC 3165399 Query 269327 GTCCTGGTGTAATG 269340 |||| || |||||| Sbjct 3165400 GTCCAGGAGTAATG 3165413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644348975870