Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq626 93.3 9e-14 >seq626 Length=20921866 Score = 93.3 bits (102), Expect = 9e-14 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATC--GCGCTTGGTTATGAGAAAGTGT 243649 || ||||| || || || ||||| | |||| | | | ||| || | ||| ||| ||| Sbjct 3165252 CAATACATTGAGTTTGTCGCCGATC--ATTTGCTCCAAGAGCTCGGATGTGACAAACTGT 3165309 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 |||| ||||||||| |||| ||| |||||| ||||||| | | || || || |||| Sbjct 3165310 ACAAAGTCAAGAACCCATTTGACTTCATGGAGAACATTTCGATCGACGGAAAGACCAACT 3165369 Query 243710 TCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 ||||||| || |||||| || |||||||| || || || ||| Sbjct 3165370 TCTTCGAGAAACGTGTCTCCGAATATCAACGTCCAGGAGTAATG 3165413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870603117750