Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq626 107 2e-18 >seq626 Length=20921866 Score = 107 bits (118), Expect = 2e-18 Identities = 400/625 (64%), Gaps = 9/625 (1%) Strand=Plus/Minus Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 |||||| || || |||||||||||||| ||| | || ||| ||||| || Sbjct 6579894 ACTTTGCATAAAGAGCTTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGC 6579835 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 |||||| | || ||||| | | | | ||| || ||||||||||||||||| || | Sbjct 6579834 ATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCA 6579775 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 114878 ||||||||| ||| ||||| ||| || | ||||| || || || | Sbjct 6579774 CCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAA 6579715 Query 114879 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 114938 | | || || | || ||| |||||||| || || ||||| | |||| | | ||| Sbjct 6579714 GAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAG-CTCCT 6579656 Query 114939 TACGACGA------CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | || || |||| | ||||| | |||||| || | || ||||||| Sbjct 6579655 G--GGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCA 6579598 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 115052 | || |||| |||| || ||||| || || ||| ||| | || | | Sbjct 6579597 TCGGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAA 6579538 Query 115053 CATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 115112 | |||| || | ||||| || || || | ||| ||||| | || |||| | | | Sbjct 6579537 TCTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCA 6579478 Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACA 115172 | ||||||| ||| ||||| || | | ||| || |||||||| ||||| Sbjct 6579477 AGGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACA 6579418 Query 115173 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 115232 | ||||| | ||| |||| ||||||||| ||||| | || || | | | | Sbjct 6579417 TCTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCT 6579358 Query 115233 GGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 115292 |||||| || ||| ||||| | | | || |||||| || |||||||||||||| | Sbjct 6579357 CCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGG 6579298 Query 115293 AGACCCGCATAAACATGTATTGGGG 115317 ||| ||||| ||||| | ||| || Sbjct 6579297 CGACACGCATCAACATCTGTTGTGG 6579273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348634498200