Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq626 84.2 2e-11 seq537 84.2 2e-11 seq502 84.2 2e-11 >seq626 Length=20921866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 12335113 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 12335172 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 12335173 TCACCACTATACTACCGAGGA 12335193 >seq537 Length=59655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 41748 AAAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 41689 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 41688 TCACCACTATACTACCGAGGA 41668 >seq502 Length=99826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 23037 AAAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 22978 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 22977 TCACCACTATACTACCGAGGA 22957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208284543600