Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq625 104 2e-17 seq542 91.5 1e-13 seq549 84.2 2e-11 >seq625 Length=33334924 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || | || || || | || || || ||||| ||| Sbjct 31079056 GTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 31078997 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 31078996 GCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 31078937 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| ||| || ||||| | || | ||||| || |||| ||| Sbjct 31078936 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTC 31078877 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 31078876 TTGACGAAGATTTGCAT 31078860 >seq542 Length=114868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || ||||| | || || || || || || ||||| || | | Sbjct 76682 CCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 76741 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | |||| ||||||||||| ||||| | || || | ||||||||| || || Sbjct 76742 AGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGG 76801 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || ||||| || || ||| || ||| | |||||| || || || Sbjct 76802 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACC 76861 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| || || | || || ||||| || |||||| Sbjct 76862 TCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTC-TTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 |||| || ||||| |||||| |||||||| || | | ||||| | || |||||||| Sbjct 76934 TGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCAAGCTG 76993 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| | || | | ||||| || || || |||||||| || ||||| || || Sbjct 76994 CTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTT 77053 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || ||| | || || || || ||||| | || | ||||| ||||| Sbjct 77054 GGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGTCTTTCCGGT 77113 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| || || || |||||| Sbjct 77114 CAGGGTTTTGACAAAGATCTGCATT 77138 >seq549 Length=112515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||| || |||||||||| | | ||||| | || ||||||||||| ||| Sbjct 112155 GTGGATTCCTTTGGA-TGTTGTAATCCGACAAAGTGCGACCATCCTCAAGCTGCTTTCCG 112213 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | ||||| || | ||| ||||| ||| | |||| || || ||| Sbjct 112214 GCGAAGATCAATCTTTGCTGATCTGTGGGA-TTCCTCCTTGT-CTTGAATCTTGGCCTTG 112271 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| || || ||||| | || | |||||| || ||||||||| Sbjct 112272 ACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTT 112331 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 112332 TTGACGAAGATCTGCAT 112348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640646702600