Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq626 152 5e-32 >seq626 Length=20921866 Score = 152 bits (168), Expect = 5e-32 Identities = 399/604 (66%), Gaps = 6/604 (1%) Strand=Plus/Plus Query 93723 TTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATG--GCAGGGTT 93780 |||||| | ||||| ||||| ||| ||||| || || ||||| | | || | Sbjct 6579206 TTACTTCGGATTCAAGACTCTTGAGCGTTCGTATCTTCTGAAGATCAACAAAGAAGTCGT 6579265 Query 93781 TCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG 93840 | ||||| || || ||| || ||||||| ||||||||||| |||||||| | |||| Sbjct 6579266 T--GAGCGGCCACAACAGATGTTGATGCGTGTCGCCATCGGTATTCACGGAGAGAACATT 6579323 Query 93841 CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGA-CAAGAGGTATACCATGGCCACCCC 93899 | || | | | | || ||| ||| | | | | |||| | |||| Sbjct 6579324 CAAGCTGCCATCGAGACGTACAATCTGATGTCGGAGCGATACATGACGCATG-CTTCCCC 6579382 Query 93900 GACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAA 93959 || || |||||| | || || ||||||||||| ||||| |||||| | || | Sbjct 6579383 AACTCTCTTCAACTCTGGAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAAT 6579442 Query 93960 CAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAA 94019 | | || || || |||||| | ||| | | | ||| | ||||| |||||| || Sbjct 6579443 GAGCGAGGATTCGATTCTCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAA 6579502 Query 94020 ATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCG 94079 || || ||||| || ||| |||||| | | || || | || || ||| Sbjct 6579503 GAGTGCCGGAGGAATTGGACTCAACGTCCACAAGATTCGCGCTACAGGATCTGTCATTGC 6579562 Query 94080 CGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGC 94139 ||| |||||||| || ||||| || ||| |||| ||||| || |||| ||||||| | || Sbjct 6579563 CGGAACCAATGGAACTTCCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACAGC 6579622 Query 94140 GCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCC 94199 || || || || ||||| || | | | || ||||||| |||| || ||||| Sbjct 6579623 TCGTTATGTTGATCAGGGAGGAAACAAGCGCCCAGGAGCTTTCGCCATCTACCTTGAGCC 6579682 Query 94200 CTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGA 94259 |||||||| || || | ||| ||| || || |||||| ||| || ||| Sbjct 6579683 ATGGCACGCCGATGTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGA 6579742 Query 94260 GAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGA 94319 | | || | || || ||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 6579743 GCGTGCTCGTGATCTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGA 6579802 Query 94320 GAAA 94323 |||| Sbjct 6579803 GAAA 6579806 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||||| || | ||| | ||||| ||||| || ||||| | || | ||||| ||| Sbjct 6571884 AAGGTCGTGAAGGCTCGCAAGCTCTGGGAGCACATCGTCTCCAACCAAATCGAGACTGGT 6571825 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 || |||||| | ||| ||| ||| |||| ||||| || |||||| | ||||| Sbjct 6571824 CTTCCATACATCACCTACAAAGACGCTGCCAACCGGAAGTCGAATCAGCAGAATCTCGGA 6571765 Query 94555 GTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATT 94614 |||||| |||||||||| ||||||||||| | ||||| || |||| |||||| | Sbjct 6571764 ACCATCAAGTGCTCGAATCTCTGCACCGAGATCATGGAGTACTCTGCTCCAGACGAGGTC 6571705 Query 94615 GCTGTGTGTAACCT 94628 || ||||| || || Sbjct 6571704 GCAGTGTGCAATCT 6571691 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||||| || | ||| | ||||| ||||| || ||||| | || | ||||| ||| Sbjct 6580139 AAGGTCGTGAAGGCTCGCAAGCTCTGGGAGCACATCGTCTCCAACCAAATCGAGACTGGT 6580198 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 || |||||| | ||| ||| ||| |||| ||||| || |||||| | ||||| Sbjct 6580199 CTTCCATACATCACCTACAAAGACGCTGCCAACCGGAAGTCGAATCAGCAGAATCTCGGA 6580258 Query 94555 GTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATT 94614 |||||| | |||||||| ||||||||||| | ||||| || |||| |||||| | Sbjct 6580259 ACCATCAAGTGTTCGAATCTCTGCACCGAGATCATGGAGTACTCTGCTCCAGACGAGGTC 6580318 Query 94615 GCTGTGTGTAACCT 94628 || ||||| || || Sbjct 6580319 GCAGTGTGCAATCT 6580332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719087613400