Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq549 104 2e-17 seq625 93.3 4e-14 seq542 89.7 5e-13 >seq549 Length=112515 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | ||||||||||||| |||||||||||| | Sbjct 111897 CCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 111956 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || |||| |||||| ||| || || || || || Sbjct 111957 AAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGG 112016 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | |||||| | | || ||| Sbjct 112017 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACC 112076 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || || |||||||| Sbjct 112077 TCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 112123 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||| |||||||||||| Sbjct 31079086 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 31079027 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| |||| || | || || || || || Sbjct 31079026 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 31078967 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 31078966 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 31078907 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | || ||||| |||||||| || || || || |||||| || Sbjct 31078906 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 31078856 >seq542 Length=114868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||| || || | | |||||||| || |||||||||||| Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || |||| |||| | ||| ||||| || || || Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| | ||| || Sbjct 76066 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACT 76125 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 76126 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258274818800