Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq542 89.7 4e-13 seq625 87.8 1e-12 >seq542 Length=114868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || || || || || ||||| || |||| |||| | ||||| Sbjct 77430 AACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 77489 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | | ||| ||||| ||| |||||||||||||| Sbjct 77490 GAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 77549 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| || ||||| | || || || | ||| |||||||| Sbjct 77550 GATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTT 77609 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATT--TGAAATAAA 15188 || |||| ||||| || || |||||||| ||| |||||| || Sbjct 77610 TCCAGTCAACGTTTTGACGAAGATTTGCATGATTGCTGAAATGAA 77654 >seq625 Length=33334924 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || ||||| |||||||| ||| |||| | | | || || Sbjct 31079069 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 31079010 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | |||| | || || || |||||||||||||||||| Sbjct 31079009 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 31078950 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || |||||| || || || | |||||| || || Sbjct 31078949 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 31078890 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 ||| |||||||| || || || |||||||| ||||| Sbjct 31078889 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAA 31078852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389103449525