Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq542 102 8e-17 seq625 100 3e-16 seq626 86.0 6e-12 >seq542 Length=114868 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| | || ||| ||| || Sbjct 75964 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTCA 76023 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| ||||||| || || ||||| || || || ||||||||||| | Sbjct 76024 AGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGG 76083 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || | |||||| | | ||||||||| | ||| | || || Sbjct 76084 ATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTTT 76143 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || || |||||||| Sbjct 76144 CCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 >seq625 Length=33334924 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||| || ||||| ||| | || || ||| || Sbjct 31079068 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 31079009 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| |||||| || |||||||| || || || || |||||||| | Sbjct 31079008 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 31078949 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||| || | ||||||||||| ||| | || || Sbjct 31078948 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 31078889 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || |||||| || Sbjct 31078888 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 31078856 >seq626 Length=20921866 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCAC 47498 ||||| || ||||||||||| | ||||| |||| | | ||| | ||| | Sbjct 3165255 TACATTGAGTTTGTCGCCGATCATTTGCTCCAAGAGCTCGGATGTGACAAACTGTACAAA 3165314 Query 47499 ACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTC 47558 | |||| ||||| || || ||| | ||||||||| |||| || ||||||||||| ||| Sbjct 3165315 GTCAAGAACCCATTTGACTTCATGGAGAACATTTCGATCGACGGAAAGACCAACTTCTTC 3165374 Query 47559 GAGAAGCGCGTCGGCGAATATAAACGT 47585 ||||| || ||| ||||||| ||||| Sbjct 3165375 GAGAAACGTGTCTCCGAATATCAACGT 3165401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496847399600