Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq542 111 1e-19 seq625 104 2e-17 seq549 91.5 1e-13 >seq542 Length=114868 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTT-GGATATTATAATC 45169 |||||||| | ||| | | || | || || || |||||||||| |||| || || || Sbjct 76907 ATTCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTC 76966 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 | | || | ||| || | || ||||| ||| | ||||||| |||||| || || Sbjct 76967 GGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGG 77026 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || || ||||| || |||||||| || |||| || | || | ||||||||||| || Sbjct 77027 TGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAAGCCT 77085 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | || | ||| || ||||| || ||||| ||||| || ||||| Sbjct 77086 CGACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | | || ||||| || || || ||||| |||||||| || || Sbjct 77410 ATTCCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCA 77469 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || ||||| ||| | || | || |||||||| || Sbjct 77470 GAGAGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGT 77529 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | ||| || |||| ||| Sbjct 77530 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCC 77589 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| || || | ||||| || || |||||||| Sbjct 77590 ACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 77639 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||| | ||| | ||| || | ||| Sbjct 75970 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTCAAGTTGC 76029 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| ||||| || || || || || || || || ||||| || || Sbjct 76030 TTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 76089 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||||| ||||||||| | || | || || || || Sbjct 76090 GCCTTGA-CGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCAGT 76148 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || || ||||| Sbjct 76149 CAAAGTCTTGACGAAGATCTGCAT 76172 >seq625 Length=33334924 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| ||||| | | || | || || || || ||||||||||| || || ||| | Sbjct 31079086 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 31079027 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | ||| ||||| ||| | |||| || |||||| || || ||| Sbjct 31079026 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 31078967 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || |||| || | ||| ||||| | ||||||| Sbjct 31078966 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 31078907 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| || || || || ||||| || || || |||||||| Sbjct 31078906 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 >seq549 Length=112515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| ||||| | | || ||||| || ||||| ||||||||||| || || ||| Sbjct 111896 TCCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGA 111955 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || | ||| || | ||| ||||| ||| | || || |||||||| || || || Sbjct 111956 CAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGG 112015 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || || ||||| ||||| || || |||| || | || | |||||| || | || | Sbjct 112016 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCAGAGGCTTCAA 112074 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | || || || || ||||| || || || || ||||| Sbjct 112075 CCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 112123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999442723400