Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq626 104 3e-17 >seq626 Length=20921866 Score = 104 bits (114), Expect = 3e-17 Identities = 401/624 (64%), Gaps = 7/624 (1%) Strand=Plus/Minus Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTA 116718 |||||| || || || ||||||||||| ||| |||| || ||| ||||| || Sbjct 6579894 ACTTTGCATAAAGAGCTTCAAACTCTTCTCCC-CAGCAGTCGTCGAGTCCTGGGCACTCG 6579836 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 ||| || | || ||||| | | | | ||| || ||||||||||||||||| || Sbjct 6579835 CATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGC 6579776 Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 | |||||| ||| ||| ||||| ||| || | ||||| || || || Sbjct 6579775 ACCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGA 6579716 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 | | | || || | || ||| |||||||| || || ||||| | |||| | || Sbjct 6579715 AGAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCT 6579656 Query 116899 TTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 ||| || |||| | ||||| | || || ||| | || |||||||| Sbjct 6579655 GGGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATC 6579596 Query 116956 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGAC 117014 || |||| |||| || ||||| || || ||| ||| | ||| | | | | Sbjct 6579595 GGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAG-CGCGAAT 6579537 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074 | ||||| || | ||||| || || || | ||| ||||| | || |||| | | | Sbjct 6579536 CTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAA 6579477 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134 | ||||||| || ||||| || | | ||| || |||||||| |||||| Sbjct 6579476 GGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACAT 6579417 Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||||| | ||| |||| ||||||||| ||||| | || || | | | | Sbjct 6579416 CTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTC 6579357 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 |||||| || ||| ||||| | | ||| |||||| || |||||||||||||| | Sbjct 6579356 CGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGC 6579297 Query 117255 GACCCGCATAAACATGTATTGGGG 117278 ||| ||||| ||||| | ||| || Sbjct 6579296 GACACGCATCAACATCTGTTGTGG 6579273 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | || |||||||||| ||| ||||| || | |||||||| |||||| Sbjct 6564931 TAGATGTTCGATGTATATGGCTCAATCGACTTGTTGTTTCCGAGAATTTGGGCAGTGGAG 6564990 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 ||||| ||||| || |||||||| || |||||||||| Sbjct 6564991 GCTGTTGGCATTGGAGCCATGAGCAGACTGTTGCGGA 6565027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502100221400